RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 LURAP1LQ8IV03 231 aa11.91□□□□□ -0.5
TRAF1-201ENST00000373887 C1QTNF5Q9BXJ0 243 aa11.91□□□□□ -0.5
TRAF1-201ENST00000373887 CACNA1EQ15878 2313 aa11.91□□□□□ -0.5
TRAF1-201ENST00000373887 ATP5IP56385 69 aaPredicted RBP11.91□□□□□ -0.5
TRAF1-201ENST00000373887 PRR30Q53SZ7 412 aaPredicted RBP11.91□□□□□ -0.5
TRAF1-201ENST00000373887 SBF1O95248 1867 aa11.91□□□□□ -0.5
TRAF1-201ENST00000373887 GAGE2EQ4V326 116 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 TMEM86BQ8N661 226 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 ZNF625Q96I27 306 aaPredicted RBP11.9□□□□□ -0.5
TRAF1-201ENST00000373887 JPT2Q9H910 190 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 GAGE2DQ9UEU5 116 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 DICER1Q9UPY3 1922 aaKnown RBP11.9□□□□□ -0.5
TRAF1-201ENST00000373887 SAA2-SAA4A0A096LPE2 208 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 LINC00587B1AMM8 73 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 TM4SF5O14894 197 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 SAA2P0DJI9 122 aaPredicted RBP11.9□□□□□ -0.5
TRAF1-201ENST00000373887 ORAOV1Q8WV07 137 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 IQCF6A8MYZ5 107 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 CD55P08174 381 aa11.9□□□□□ -0.5
TRAF1-201ENST00000373887 CARHSP1Q9Y2V2 147 aaKnown RBP11.9□□□□□ -0.5
TRAF1-201ENST00000373887 LSM4Q9Y4Z0 139 aaKnown RBP11.9□□□□□ -0.5
TRAF1-201ENST00000373887 TRAV14DV4A0A0A6YYC5 116 aa11.9□□□□□ -0.51
TRAF1-201ENST00000373887 SRSF3P84103 164 aaKnown RBP11.89□□□□□ -0.51
TRAF1-201ENST00000373887 GTSCR1Q86UQ5 136 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ZNF525Q8N782 197 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ZIC4Q8N9L1 334 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ZSWIM8A7E2V4 1837 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 SPTA1P02549 2419 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 TCRBV4S1A1TA0A5B7 111 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 GZMBP10144 247 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 SAMD5Q5TGI4 173 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ATRAIDQ6UW56 229 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 DMRTC2Q8IXT2 367 aaPredicted RBP11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ZNF479Q96JC4 524 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 EDA2RQ9HAV5 297 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 CACNA1GO43497 2377 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 SCN8AQ9UQD0 1980 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 GTF3AQ92664 365 aaKnown RBP11.89□□□□□ -0.51
TRAF1-201ENST00000373887 A0A0G2JK05 382 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 A0A0G2JNJ9 132 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 FXYD7P58549 80 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ASCL2Q99929 193 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 Q9UFV3 132 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 NBR2O15453 112 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 PLPPR1Q8TBJ4 325 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 ERG28Q9UKR5 140 aa11.89□□□□□ -0.51
TRAF1-201ENST00000373887 A0A087WV48 116 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 CSRP3P50461 194 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 TMEM219Q86XT9 240 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 MAPK1IP1LQ8NDC0 245 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 OCIAD2Q56VL3 154 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 MS4A6AQ9H2W1 248 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 PAX4O43316 350 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 LY6HO94772 140 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 CCL1P22362 96 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 KLRD1Q13241 179 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 GAGE13Q4V321 117 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 Q71RC1 249 aaPredicted RBP11.88□□□□□ -0.51
TRAF1-201ENST00000373887 MRPS18CQ9Y3D5 142 aaKnown RBP11.88□□□□□ -0.51
TRAF1-201ENST00000373887 ASCL4Q6XD76 172 aa11.88□□□□□ -0.51
TRAF1-201ENST00000373887 ZNF318Q5VUA4 2279 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 INS-IGF2F8WCM5 200 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 RAMP3O60896 148 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 NAPSAO96009 420 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 INSP01308 110 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 RHOGP84095 191 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 TMEM170AQ8WVE7 144 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 RNF125Q96EQ8 232 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 EPDR1Q9UM22 224 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 J3QW42 95 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 NDUFS8O00217 210 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 PSMG4Q5JS54 123 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 PSG8Q9UQ74 426 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 DOCK6Q96HP0 2047 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 TRAV9-2A0A087WT02 112 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 IGHV3-53P01767 116 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 MYOD1P15172 320 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 A0A087WWC5 75 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 NCR2O95944 276 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 ATP5L2Q7Z4Y8 100 aa11.87□□□□□ -0.51
TRAF1-201ENST00000373887 IGKV2-40A0A087WW87 121 aaPredicted RBP11.86□□□□□ -0.51
TRAF1-201ENST00000373887 IGKV2D-40P01614 121 aaPredicted RBP11.86□□□□□ -0.51
TRAF1-201ENST00000373887 BRD3OSQ6XYD6 125 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 SSC4DQ8WTU2 575 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 FBLIM1Q8WUP2 373 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 TM2D1Q9BX74 207 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 IGHV1-46P01743 117 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 LYZL4Q96KX0 146 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 TRAV9-1A0A075B6T8 112 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 TMEM8BA6NDV4 472 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 NPIPB13A6NJU9 1138 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 TNFRSF6BO95407 300 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 CRIM1Q9NZV1 1036 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 TRAV8-1A0A0A6YYK1 113 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 NPIPB5A8MRT5 1133 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 ZFAND6Q6FIF0 208 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 WBP1Q96G27 269 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 SLC50A1Q9BRV3 221 aa11.86□□□□□ -0.51
TRAF1-201ENST00000373887 UPK2O00526 184 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms