RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-208ENST00000367256 OTORQ9NRC9 128 aa6.17□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM167AQ8TBQ9 72 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 FOXH1O75593 365 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 SAMD5Q5TGI4 173 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 PPP1R27Q86WC6 154 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 DPH3P1Q9H4G8 78 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 PEMTQ9UBM1 199 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 CYSLTR1Q9Y271 337 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 BRWD3Q6RI45 1802 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 TRAV2A0A0B4J234 112 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 VDAC2P45880 294 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-208ENST00000367256 ORAOV1Q8WV07 137 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 A0A1W2PRS3 328 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 PROB1E7EW31 1015 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 ITGBL1O95965 494 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-208ENST00000367256 FOXL2P58012 376 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 RTN4RL2Q86UN3 420 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 SMRP1Q8NCR6 262 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 ZNF501Q96CX3 271 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-208ENST00000367256 A8MWV9 139 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 HBDP02042 147 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 GAGE13Q4V321 117 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 JMJD8Q96S16 334 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 CD5P06127 495 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 COX6A1P12074 109 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 SPANXB1Q9NS25 103 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM249Q2WGJ8 235 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 ORMDL2Q53FV1 153 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM238C9JI98 176 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 LDLRAD2Q5SZI1 272 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 HIST1H2BLQ99880 126 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 ASCL2Q99929 193 aa6.16□□□□□ -1.42
SYNE1-208ENST00000367256 C5orf67F2Z3F1 127 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 IGKCP01834 107 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 BSPH1Q075Z2 132 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM155Q4W5P6 130 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 VGLL1Q99990 258 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 NOTCH4Q99466 2003 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 LGALS1P09382 135 aaKnown RBP6.15□□□□□ -1.42
SYNE1-208ENST00000367256 CLEC19AQ6UXS0 136 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 ZNRF1Q8ND25 227 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 CITED1Q99966 193 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 RTBDNQ9BSG5 229 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-208ENST00000367256 RNASE7Q9H1E1 156 aaKnown RBP6.15□□□□□ -1.42
SYNE1-208ENST00000367256 IGHV3OR16-8A0A075B7F1 116 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 SMIM10L1P0DMW3 83 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 ADMP35318 185 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 SRSF7Q16629 238 aaKnown RBP eCLIP6.15□□□□□ -1.42
SYNE1-208ENST00000367256 HIST3H2BBQ8N257 126 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM54Q969K7 222 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 SMIM10Q96HG1 83 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 TRAV14DV4A0A0A6YYC5 116 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 F8WEM9 126 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 LAGE3Q14657 143 aa6.15□□□□□ -1.42
SYNE1-208ENST00000367256 PLXNA3P51805 1871 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 A0A1W2PRE2 83 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 TDGF1P3P51864 188 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 ATRAIDQ6UW56 229 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 DSCAMO60469 2012 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 TRAV8-1A0A0A6YYK1 113 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 MYOD1P15172 320 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 EGR1P18146 543 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 RPL23P62829 140 aaKnown RBP6.15□□□□□ -1.43
SYNE1-208ENST00000367256 DTX2Q86UW9 622 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 C18orf12Q96KH6 178 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF703Q9H7S9 590 aaPredicted RBP6.15□□□□□ -1.43
SYNE1-208ENST00000367256 SAA2-SAA4A0A096LPE2 208 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 SAA2P0DJI9 122 aaPredicted RBP6.15□□□□□ -1.43
SYNE1-208ENST00000367256 BTCP35070 178 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 PILRBQ9UKJ0 227 aa6.15□□□□□ -1.43
SYNE1-208ENST00000367256 IGHV3-64A0A075B6Q5 118 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 TRBV6-7A0A0A0MS04 114 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 IGFBP3P17936 291 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 EVI2AP22794 236 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 MIR17HGQ75NE6 70 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF525Q8N782 197 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 EPDR1Q9UM22 224 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 FOXL1Q12952 345 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 Q6ZT83 130 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 COQ2Q96H96 371 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 TRGV11A0A075B6L2 103 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 HIST1H4AP62805 103 aaKnown RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 OVOL2Q9BRP0 275 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 GFRA3O60609 400 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 MORN3Q6PF18 240 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 C1orf194Q5T5A4 169 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 GTSCR1Q86UQ5 136 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 STHQ8IWL8 128 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 MSGN1A6NI15 193 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 C17orf98A8MV24 154 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 ATP5G3P48201 142 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 ERVK11-1P61568 191 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF479Q96JC4 524 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF48Q96MX3 618 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 LY96Q9Y6Y9 160 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 KBTBD11-OT1A0A1B0GTJ5 212 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 GFI1BQ5VTD9 330 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 GLMPQ8WWB7 406 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 FOXD3Q9UJU5 478 aaPredicted RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms