RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 XIRP1Q702N8 1843 aaKnown RBP15.24■□□□□ 0.03
SHANK1-202ENST00000359082 RPL15P61313 204 aaKnown RBP15.24■□□□□ 0.03
SHANK1-202ENST00000359082 TMEM219Q86XT9 240 aa15.24■□□□□ 0.03
SHANK1-202ENST00000359082 PRCDQ00LT1 54 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 MRPL14Q6P1L8 145 aaKnown RBP15.23■□□□□ 0.03
SHANK1-202ENST00000359082 WDR90Q96KV7 1748 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 KLRD1Q13241 179 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 ANAPC13Q9BS18 74 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 NPIPB5A8MRT5 1133 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 SRSF6Q13247 344 aaKnown RBP15.23■□□□□ 0.03
SHANK1-202ENST00000359082 GATD1Q8NB37 220 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 PTPRFP10586 1907 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 M0R2P5 195 aa15.23■□□□□ 0.03
SHANK1-202ENST00000359082 TRAV41A0A0B4J266 112 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 GGTLC3B5MD39 225 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 FGFBP3Q8TAT2 258 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 SLC25A28Q96A46 364 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 RCHY1Q96PM5 261 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 OSTCQ9NRP0 149 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 OVOL1O14753 267 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 IGHV1-46P01743 117 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 SRSF4Q08170 494 aaKnown RBP15.22■□□□□ 0.03
SHANK1-202ENST00000359082 TMEM105Q8N8V8 129 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 TDRD6O60522 2096 aaKnown RBP15.22■□□□□ 0.03
SHANK1-202ENST00000359082 TRAV9-2A0A087WT02 112 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 PLXNA1Q9UIW2 1896 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 SCN2AQ99250 2005 aa15.22■□□□□ 0.03
SHANK1-202ENST00000359082 IGKV1-9A0A0C4DH69 117 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 PLNP26678 52 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 BTCP35070 178 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 ASCL4Q6XD76 172 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 LAGE3Q14657 143 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 ORAOV1Q8WV07 137 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 PRADC1Q9BSG0 188 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 ZNF236Q9UL36 1845 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 TMEM8BA6NDV4 472 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 NCR2O95944 276 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 DUTP33316 252 aaKnown RBP15.21■□□□□ 0.03
SHANK1-202ENST00000359082 TMEM86BQ8N661 226 aa15.21■□□□□ 0.03
SHANK1-202ENST00000359082 TMEM155Q4W5P6 130 aa15.21■□□□□ 0.02
SHANK1-202ENST00000359082 GNB1LQ9BYB4 327 aa15.21■□□□□ 0.02
SHANK1-202ENST00000359082 IGHV3-53P01767 116 aa15.2■□□□□ 0.02
SHANK1-202ENST00000359082 RPL35AP18077 110 aaKnown RBP15.2■□□□□ 0.02
SHANK1-202ENST00000359082 SPATA31B1PQ5VZV4 182 aa15.2■□□□□ 0.02
SHANK1-202ENST00000359082 CHCHD1Q96BP2 118 aaKnown RBP15.2■□□□□ 0.02
SHANK1-202ENST00000359082 PTPRZ1P23471 2315 aaPredicted RBP15.2■□□□□ 0.02
SHANK1-202ENST00000359082 ATP5L2Q7Z4Y8 100 aa15.2■□□□□ 0.02
SHANK1-202ENST00000359082 MBNL3Q9NUK0 354 aaKnown RBP15.2■□□□□ 0.02
SHANK1-202ENST00000359082 NAPSAO96009 420 aa15.2■□□□□ 0.02
SHANK1-202ENST00000359082 DMRTC2Q8IXT2 367 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-202ENST00000359082 CDK2AP2O75956 126 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 ZNF474Q6S9Z5 364 aaPredicted RBP15.19■□□□□ 0.02
SHANK1-202ENST00000359082 IGHV2-26A0A0B4J1V2 119 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 F2Z2F3 143 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 FOXF2Q12947 444 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 ZNF124Q15973 351 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 NR2C2APQ86WQ0 139 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 EXOC3-AS1Q8N2X6 119 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 TSKUQ8WUA8 353 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 SIGMAR1Q99720 223 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 DNAJC13O75165 2243 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 A0A1W2PRE2 83 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 UBE2CO00762 179 aa15.19■□□□□ 0.02
SHANK1-202ENST00000359082 A6NNC1 897 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 ATXN8Q156A1 80 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 KNTC1P50748 2209 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 NDUFS8O00217 210 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 IFI27L1Q96BM0 104 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 IGKV1D-8A0A087WSZ0 117 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 SAMD5Q5TGI4 173 aa15.18■□□□□ 0.02
SHANK1-202ENST00000359082 TOMM40O96008 361 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 NDPQ00604 133 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 SCRT1Q9BWW7 348 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 PATJQ8NI35 1801 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 CCL1P22362 96 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 PMS2P5A8MQ11 134 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 A8MWV9 139 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 LY6G6FQ5SQ64 297 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 TMEM200BQ69YZ2 307 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 GTF3AQ92664 365 aaKnown RBP15.17■□□□□ 0.02
SHANK1-202ENST00000359082 CRIM1Q9NZV1 1036 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 ZNF319Q9P2F9 582 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 ERG28Q9UKR5 140 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 DEFB121Q5J5C9 76 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 PPBPP02775 128 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H4AP62805 103 aaKnown RBP15.17■□□□□ 0.02
SHANK1-202ENST00000359082 SRSF7Q16629 238 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHANK1-202ENST00000359082 C15orf32Q32M92 178 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 C10orf55Q5SWW7 151 aa15.17■□□□□ 0.02
SHANK1-202ENST00000359082 D6R8Y8 96 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 TIMP3P35625 211 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 JPT2Q9H910 190 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BKO60814 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 IGLV3-19P01714 112 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BJP06899 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BOP23527 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BBP33778 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BDP58876 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BCP62807 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST2H2BEQ16778 126 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms