RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 IGLC1P0CG04 106 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 OR10J1P30954 320 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 CD81P60033 236 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 C12orf45Q8N5I9 185 aaPredicted RBP12.78□□□□□ -0.36
CLN3-203ENST00000357806 ACY3Q96HD9 319 aa12.78□□□□□ -0.36
CLN3-203ENST00000357806 SCAF4O95104 1147 aaKnown RBP12.77□□□□□ -0.37
CLN3-203ENST00000357806 SCGB1D2O95969 90 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 IGKV1-17P01599 117 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 IL5P05113 134 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 BMI1P35226 326 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 GPX4P36969 197 aaPredicted RBP12.77□□□□□ -0.37
CLN3-203ENST00000357806 POLR2GP62487 172 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLN3-203ENST00000357806 TIGITQ495A1 244 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 LAMTOR1Q6IAA8 161 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 NRARPQ7Z6K4 114 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 ZBTB8BQ8NAP8 495 aaPredicted RBP12.77□□□□□ -0.37
CLN3-203ENST00000357806 NPIPB3Q92617 1050 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 SLC35E1Q96K37 410 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 SMPXQ9UHP9 88 aa12.77□□□□□ -0.37
CLN3-203ENST00000357806 H3BP45 60 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 CCSO14618 274 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 SSSCA1O60232 199 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 IGHV4-30-4P0DP06 118 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 SPANXN5Q5MJ07 72 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 NEURL2Q9BR09 285 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 GPN1Q9HCN4 374 aaPredicted RBP12.76□□□□□ -0.37
CLN3-203ENST00000357806 GSKIPQ9P0R6 139 aa12.76□□□□□ -0.37
CLN3-203ENST00000357806 STRAPQ9Y3F4 350 aaKnown RBP12.76□□□□□ -0.37
CLN3-203ENST00000357806 CHEK1O14757 476 aa12.75□□□□□ -0.37
CLN3-203ENST00000357806 FRMD6-AS1P0C7T7 363 aa12.75□□□□□ -0.37
CLN3-203ENST00000357806 YPEL3P61236 119 aaPredicted RBP12.75□□□□□ -0.37
CLN3-203ENST00000357806 SPAG8Q99932 426 aaPredicted RBP12.75□□□□□ -0.37
CLN3-203ENST00000357806 RHPN1-AS1Q9BWJ2 59 aa12.75□□□□□ -0.37
CLN3-203ENST00000357806 IGHV3-49A0A0A0MS15 119 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 C5orf51A6NDU8 294 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 FAM25EA8MYX2 175 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 A8MZ25 164 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 TSPAN4O14817 238 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 CD7P09564 240 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 GAMTQ14353 236 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 Q8WTZ3 238 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 METTL26Q96S19 204 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 PSENENQ9NZ42 101 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 COL7A1Q02388 2944 aa12.74□□□□□ -0.37
CLN3-203ENST00000357806 PRAF2O60831 178 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 TOMM40O96008 361 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 SMIM8Q96KF7 97 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 RAB40CQ96S21 281 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 RNF2Q99496 336 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 TMEM231Q9H6L2 316 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 DNAH9Q9NYC9 4486 aa12.73□□□□□ -0.37
CLN3-203ENST00000357806 ZFP92A6NM28 416 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 PRSS46E5RG02 174 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 INMT-MINDY4F8WBC2 141 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 CD5P06127 495 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 NHLRC4P0CG21 123 aaPredicted RBP12.72□□□□□ -0.37
CLN3-203ENST00000357806 NPPCP23582 126 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 GSG1LQ6UXU4 331 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 NARS2Q96I59 477 aaKnown RBP12.72□□□□□ -0.37
CLN3-203ENST00000357806 MARVELD1Q9BSK0 173 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 VSIRQ9H7M9 311 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 TUBA4BQ9H853 241 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 C19orf73Q9NVV2 129 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 RCL1Q9Y2P8 373 aaKnown RBP12.72□□□□□ -0.37
CLN3-203ENST00000357806 IGHV3OR16-13A0A075B7E8 117 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 IGHV3-74A0A0B4J1X5 117 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 A0A1W2PS18 150 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 SNRPGP15A8MWD9 76 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 MBPP02686 304 aaPredicted RBP12.72□□□□□ -0.37
CLN3-203ENST00000357806 TAS2R30P59541 319 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 ST8SIA2Q92186 375 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 C2orf50Q96LR7 162 aa12.72□□□□□ -0.37
CLN3-203ENST00000357806 OR4C46A6NHA9 309 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 OR11H12B2RN74 326 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 TSC22D2O75157 780 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 APOHP02749 345 aaPredicted RBP12.71□□□□□ -0.38
CLN3-203ENST00000357806 IL4P05112 153 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 FABP1P07148 127 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 RD3LP0DJH9 198 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 CRYBB3P26998 211 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 ASCL2Q99929 193 aa12.71□□□□□ -0.38
CLN3-203ENST00000357806 PSG1P11464 419 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 PAX9P55771 341 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 OR8G2PQ6IF36 304 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 ACOT7LQ6ZUV0 252 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 TCF24Q7RTU0 167 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 SBSPONQ8IVN8 264 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 OR51G1Q8NGK1 321 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 WFDC10AQ9H1F0 79 aa12.7□□□□□ -0.38
CLN3-203ENST00000357806 LSM5Q9Y4Y9 91 aaKnown RBP12.7□□□□□ -0.38
CLN3-203ENST00000357806 IGKV1D-37A0A075B6S9 117 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 IGHV3-66A0A0C4DH42 116 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 K7EPK0 472 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 L7N2F9 121 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 HNRNPCP07910 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLN3-203ENST00000357806 VAMP2P63027 116 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 AKR1C1Q04828 323 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 USF2Q15853 346 aaPredicted RBP12.69□□□□□ -0.38
CLN3-203ENST00000357806 FAM90A2PQ658T7 463 aa12.69□□□□□ -0.38
CLN3-203ENST00000357806 TMEM14EPQ6UXP3 125 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms