RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TCF24Q7RTU0 167 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 TMEM167AQ8TBQ9 72 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 KLK15Q9H2R5 256 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 OTORQ9NRC9 128 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 WDR83OSQ9Y284 106 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 CBY3A6NI87 242 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 SRD5A1P18405 259 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 ZNRD1Q9P1U0 126 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 LINC01587Q99440 93 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 PAM16Q9Y3D7 125 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 OR4C46A6NHA9 309 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 HBBP68871 147 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 SRSF9Q13242 221 aaKnown RBP eCLIP12.19□□□□□ -0.46
COL17A1-201ENST00000353479 C19orf54Q5BKX5 351 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 TREML4Q6UXN2 200 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 TBL2Q9Y4P3 447 aaKnown RBP12.19□□□□□ -0.46
COL17A1-201ENST00000353479 TRBV20OR9-2A0A075B6H5 130 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 GRIFINA4D1Z8 144 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 EFNB3Q15768 340 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 NMSQ5H8A3 153 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 PRTN3P24158 256 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 CRXO43186 299 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-201ENST00000353479 IGLV1-44P01699 117 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 EMP1P54849 157 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 SLC50A1Q9BRV3 221 aa12.19□□□□□ -0.46
COL17A1-201ENST00000353479 RUSC1-AS1Q66K80 236 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 IGF2-ASQ6U949 168 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 WDR86Q86TI4 376 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 MSMBP08118 114 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 PRB4P10163 310 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-201ENST00000353479 Q6ZS49 121 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 VSIRQ9H7M9 311 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 ZFP30Q9Y2G7 519 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 GATA4P43694 442 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 A0A1W2PNU3 283 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-201ENST00000353479 CBLN1P23435 193 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 NMUP48645 174 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 OR1N2Q8NGR9 330 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 Q8TCH9 128 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 SIGLEC9Q9Y336 463 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 TRAV5A0A0B4J249 113 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 IFITM10A6NMD0 228 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 DUX4L9Q6RFH8 374 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-201ENST00000353479 MARVELD3Q96A59 401 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 SLX1AQ9BQ83 275 aa12.18□□□□□ -0.46
COL17A1-201ENST00000353479 STHQ8IWL8 128 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 RPL13AP40429 203 aaKnown RBP12.17□□□□□ -0.46
COL17A1-201ENST00000353479 RSPO1Q2MKA7 263 aaPredicted RBP12.17□□□□□ -0.46
COL17A1-201ENST00000353479 SAMD13Q5VXD3 122 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 LEPROTL1O95214 131 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 ZNF329Q86UD4 541 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 IGKV3OR2-268A0A0C4DH90 116 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 ZNF324O75467 553 aaPredicted RBP12.17□□□□□ -0.46
COL17A1-201ENST00000353479 IGKV1-16P04430 117 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 FAM209BQ5JX69 171 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 IGFL2Q6UWQ7 119 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 RPP21Q9H633 154 aaKnown RBP12.17□□□□□ -0.46
COL17A1-201ENST00000353479 PLXNB3Q9ULL4 1909 aa12.17□□□□□ -0.46
COL17A1-201ENST00000353479 M0R3E3 92 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 AREGP15514 252 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 FOXA3P55318 350 aaPredicted RBP12.16□□□□□ -0.46
COL17A1-201ENST00000353479 CIARTQ8N365 385 aaPredicted RBP12.16□□□□□ -0.46
COL17A1-201ENST00000353479 IFT22Q9H7X7 185 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 Q96MF0 132 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 ATG101Q9BSB4 218 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 KIR2DL4Q99706 377 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 PSG1P11464 419 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 IL36BQ9NZH7 164 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 GRNP28799 593 aaKnown RBP12.16□□□□□ -0.46
COL17A1-201ENST00000353479 TAS2R60P59551 318 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 GGTLC1Q9BX51 225 aa12.16□□□□□ -0.46
COL17A1-201ENST00000353479 PSMB2P49721 201 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 EPDR1Q9UM22 224 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 TRBV9A0A0B4J1U6 114 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 IGKV1-6A0A0C4DH72 117 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 RPL15P61313 204 aaKnown RBP12.15□□□□□ -0.46
COL17A1-201ENST00000353479 FAM71F2Q6NXP2 309 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 SIGLEC15Q6ZMC9 328 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 SDF2L1Q9HCN8 221 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 A0A1B0GWJ7 208 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 CD33P20138 364 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 LMO1P25800 156 aa12.15□□□□□ -0.46
COL17A1-201ENST00000353479 DKK1O94907 266 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 WFDC12Q8WWY7 111 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 M0R143 59 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 RNF151Q2KHN1 245 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 PAX1P15863 534 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 ZGRF1Q86YA3 2104 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 A0A1B0GUT8 65 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 RNASE7Q9H1E1 156 aaKnown RBP12.14□□□□□ -0.47
COL17A1-201ENST00000353479 F11RQ9Y624 299 aaKnown RBP12.14□□□□□ -0.47
COL17A1-201ENST00000353479 A0A0G2JRQ6 117 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 PRB1P04280 392 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 SMIM6P0DI80 62 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 HTN3P15516 51 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 FER1L6-AS1Q8NA97 138 aa12.14□□□□□ -0.47
COL17A1-201ENST00000353479 WNK2Q9Y3S1 2297 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 TMEM262E9PQX1 116 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 SAP30O75446 220 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 CCL20P78556 96 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms