RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF826PQ6ZT77 177 aa12.9□□□□□ -0.34
HMGA1-202ENST00000347617 VPS25Q9BRG1 176 aa12.9□□□□□ -0.34
HMGA1-202ENST00000347617 AMMECR1Q9Y4X0 333 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-202ENST00000347617 A0A0G2JNJ9 132 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 LOXL3P58215 753 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 UBE2L3P68036 154 aaKnown RBP12.89□□□□□ -0.35
HMGA1-202ENST00000347617 KLRB1Q12918 225 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 BVES-AS1Q5T3Y7 98 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 VKORC1L1Q8N0U8 176 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 NUDT10Q8NFP7 164 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 NUDT11Q96G61 164 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 Q9UFV3 132 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 CEP295Q9C0D2 2601 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 SYS1-DBNDD2H3BUS1 97 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 PEX7O00628 323 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 GLRXP35754 106 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 MPV17P39210 176 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 HBBP68871 147 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 HIST1H1AQ02539 215 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-202ENST00000347617 RPL39P5Q59GN2 51 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 VKORC1Q9BQB6 163 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 METRNQ9UJH8 293 aa12.89□□□□□ -0.35
HMGA1-202ENST00000347617 PRRC2CQ9Y520 2896 aaKnown RBP12.89□□□□□ -0.35
HMGA1-202ENST00000347617 UPK2O00526 184 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 LIPFP07098 398 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 MPV17L2Q567V2 206 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 FAM71F2Q6NXP2 309 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 CD177Q8N6Q3 437 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 TMEM190Q8WZ59 177 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 FAM167A-AS1Q96KT0 104 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 PEF1Q9UBV8 284 aaKnown RBP12.88□□□□□ -0.35
HMGA1-202ENST00000347617 WASHC3Q9Y3C0 194 aa12.88□□□□□ -0.35
HMGA1-202ENST00000347617 MGAQ8IWI9 3026 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 DCHS1Q96JQ0 3298 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 FAM231BA6NCW3 169 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 TIMM8AO60220 97 aaPredicted RBP12.87□□□□□ -0.35
HMGA1-202ENST00000347617 CFHR2P36980 270 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 BPIFB3P59826 476 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 RPL8P62917 257 aaKnown RBP12.87□□□□□ -0.35
HMGA1-202ENST00000347617 CD69Q07108 199 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 EDDM3AQ14507 147 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 GDF5OSQ5U4N7 250 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 TPRX1Q8N7U7 411 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 LRRC29Q8WV35 223 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 SLC25A2Q9BXI2 301 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 GFRA4Q9GZZ7 299 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 FAM234AQ9H0X4 552 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 ZNF355PQ9NSJ1 428 aa12.87□□□□□ -0.35
HMGA1-202ENST00000347617 A8MWL6 223 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 INS-IGF2F8WCM5 200 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 C16orf97H3BN30 126 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 LEPROTL1O95214 131 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 NUDT3O95989 172 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 LTC4SQ16873 150 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 FAM120AOSQ5T036 256 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 PRR27Q6MZM9 219 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 Q6ZVH6 145 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 ZNF329Q86UD4 541 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 STXBP6Q8NFX7 210 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 ZNF492Q9P255 531 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 CACNA1DQ01668 2161 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 PSMB11A5LHX3 300 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 SRRM5B3KS81 715 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 IGHV3-13P01766 116 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 FAM27E3Q08E93 113 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 LDLRAD2Q5SZI1 272 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 ETFRF1Q6IPR1 90 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 FAM168AQ92567 244 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 RND1Q92730 232 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 PAXXQ9BUH6 204 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 SSBP3Q9BWW4 388 aaPredicted RBP12.86□□□□□ -0.35
HMGA1-202ENST00000347617 MAP1LC3CQ9BXW4 147 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 SCRT2Q9NQ03 307 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 CALYQ9NYX4 217 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 HSPB8Q9UJY1 196 aa12.86□□□□□ -0.35
HMGA1-202ENST00000347617 HIGD1CA8MV81 97 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 SEC11AP67812 179 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 OR2T6Q8NHC8 308 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 DPF1Q92782 380 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 NDFIP1Q9BT67 221 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 DCTN5Q9BTE1 182 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 C7orf69Q9H7B7 122 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 KLF12Q9Y4X4 402 aa12.85□□□□□ -0.35
HMGA1-202ENST00000347617 PIEZO1Q92508 2521 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 IGHV3-64DA0A0J9YX35 117 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 M0R1B8 84 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 COX7A2P2O60397 106 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CA1P00915 261 aaPredicted RBP12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CGB3P0DN86 165 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CGB7P0DN87 165 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 RNASE2P10153 161 aaKnown RBP12.84□□□□□ -0.35
HMGA1-202ENST00000347617 FABP6P51161 128 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 URB1-AS1Q96HZ7 61 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 RPP21Q9H633 154 aaKnown RBP12.84□□□□□ -0.35
HMGA1-202ENST00000347617 IGLV3-9A0A075B6K5 115 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 IGKV1OR2-108A0A075B7D4 117 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 IGHV1-24A0A0C4DH33 117 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 CBY3A6NI87 242 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 ZNF134P52741 427 aa12.84□□□□□ -0.35
HMGA1-202ENST00000347617 ARF6P62330 175 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms