RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 DNLZQ5SXM8 178 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 GCGP01275 180 aa12.35□□□□□ -0.43
UPF3B-202ENST00000345865 FAM209BQ5JX69 171 aa12.35□□□□□ -0.43
UPF3B-202ENST00000345865 GBGT1Q8N5D6 347 aa12.35□□□□□ -0.43
UPF3B-202ENST00000345865 RNF2Q99496 336 aa12.35□□□□□ -0.43
UPF3B-202ENST00000345865 PAXXQ9BUH6 204 aa12.35□□□□□ -0.43
UPF3B-202ENST00000345865 GRIFINA4D1Z8 144 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 COMPP49747 757 aaPredicted RBP12.34□□□□□ -0.43
UPF3B-202ENST00000345865 RPEL1Q2QD12 228 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 LINC00305Q7Z4B0 112 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 OR8I2Q8N0Y5 310 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 NHLRC2Q8NBF2 726 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 BEND2Q8NDZ0 799 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 OR1L4Q8NGR5 311 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 FXYD5Q96DB9 178 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 COL6A6A6NMZ7 2263 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 TEX22C9J3V5 150 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 FCN1O00602 326 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 TIGITQ495A1 244 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 PPP1R27Q86WC6 154 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 OR5R1Q8NH85 324 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 IGFBPL1Q8WX77 278 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 FBXL15Q9H469 300 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 GSX1Q9H4S2 264 aaPredicted RBP12.34□□□□□ -0.43
UPF3B-202ENST00000345865 TNFRSF19Q9NS68 423 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 TP53TG3Q9ULZ0 132 aa12.34□□□□□ -0.43
UPF3B-202ENST00000345865 TRAV9-1A0A075B6T8 112 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 LY6LH3BQJ8 138 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 ORM2P19652 201 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 SELENOTP62341 195 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 ZNF329Q86UD4 541 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 ST6GALNAC3Q8NDV1 305 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 C8orf46Q8TAG6 207 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 PRO1933Q9H354 126 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 SPINK4O60575 86 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 IER3P46695 156 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 OR1L6Q8NGR2 347 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 MRPL18Q9H0U6 180 aaKnown RBP12.33□□□□□ -0.44
UPF3B-202ENST00000345865 OSTCQ9NRP0 149 aa12.33□□□□□ -0.44
UPF3B-202ENST00000345865 MGST1P10620 155 aaKnown RBP12.32□□□□□ -0.44
UPF3B-202ENST00000345865 LINC00310P59036 64 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 BPIFB3P59826 476 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 UNQ6494/PRO21346Q6UXR6 183 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 TMEM116Q8NCL8 245 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 RPEQ96AT9 228 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 TMEM18Q96B42 140 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 AMMECR1Q9Y4X0 333 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-202ENST00000345865 TRAV34A0A0B4J273 112 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 ISLRO14498 428 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 SLC35B1P78383 322 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 LY6G5BQ8NDX9 201 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 OR1B1Q8NGR6 318 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 ONECUT1Q9UBC0 465 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 CDC42EP3Q9UKI2 254 aa12.32□□□□□ -0.44
UPF3B-202ENST00000345865 CA1P00915 261 aaPredicted RBP12.31□□□□□ -0.44
UPF3B-202ENST00000345865 RBP4P02753 201 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 MYCNOSP40205 109 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 TCL1AP56279 114 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 KLRB1Q12918 225 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 FAM168AQ92567 244 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 TRGV9Q99603 122 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 F11RQ9Y624 299 aaKnown RBP12.31□□□□□ -0.44
UPF3B-202ENST00000345865 CX3CL1P78423 397 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 IBA57Q5T440 356 aaKnown RBP12.31□□□□□ -0.44
UPF3B-202ENST00000345865 ETFRF1Q6IPR1 90 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 OR8B3Q8NGG8 313 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 OR8B2Q96RD0 313 aa12.31□□□□□ -0.44
UPF3B-202ENST00000345865 SNURFLB1AK76 121 aa12.3□□□□□ -0.44
UPF3B-202ENST00000345865 ARF6P62330 175 aa12.3□□□□□ -0.44
UPF3B-202ENST00000345865 RANP62826 216 aaKnown RBP12.3□□□□□ -0.44
UPF3B-202ENST00000345865 GNG5P63218 68 aa12.3□□□□□ -0.44
UPF3B-202ENST00000345865 FBLN7Q53RD9 439 aa12.3□□□□□ -0.44
UPF3B-202ENST00000345865 MRPL41Q8IXM3 137 aaKnown RBP12.3□□□□□ -0.44
UPF3B-202ENST00000345865 SRSF12Q8WXF0 261 aaKnown RBP12.3□□□□□ -0.44
UPF3B-202ENST00000345865 SPTBN1Q01082 2364 aaKnown RBP12.3□□□□□ -0.44
UPF3B-202ENST00000345865 F2Z2F3 143 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 PEX7O00628 323 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 TIMM23O14925 209 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 TAS2R60P59551 318 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 PKIAP61925 76 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 LEMD1Q68G75 181 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 ZNF664Q8N3J9 261 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 LIPFP07098 398 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 BLNKQ8WV28 456 aa12.29□□□□□ -0.44
UPF3B-202ENST00000345865 CHD8Q9HCK8 2581 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 SMIM27A0A1W2PRY6 76 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 ZNF705GA8MUZ8 300 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-202ENST00000345865 UCNP55089 124 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 KLRD1Q13241 179 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 C11orf71Q6IPW1 123 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 PERPQ96FX8 193 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 SSBP3Q9BWW4 388 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-202ENST00000345865 PAX1P15863 534 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 CD24P25063 80 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 TPTE2P1Q5T6R2 138 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 SGK494Q96LW2 274 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 GNB1LQ9BYB4 327 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 SERTAD4Q9NUC0 356 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 HILPDAQ9Y5L2 63 aa12.28□□□□□ -0.44
UPF3B-202ENST00000345865 NCOR2Q9Y618 2525 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms