RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PPIAL4GP0DN37 164 aa15.54■□□□□ 0.08
COL9A3-201ENST00000343916 MFAP2P55001 183 aa15.54■□□□□ 0.08
COL9A3-201ENST00000343916 ARL2-SNX15V9GYD0 113 aa15.54■□□□□ 0.08
COL9A3-201ENST00000343916 IGHV1-3A0A0C4DH29 117 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 TCRBV4S1A1TA0A5B7 111 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 BUB1B-PAK6H3BSN5 160 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 FOSL1P15407 271 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 ZNF124Q15973 351 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 FRMD6-AS1P0C7T7 363 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 NUTF2P61970 127 aaKnown RBP15.53■□□□□ 0.08
COL9A3-201ENST00000343916 CLEC7AQ9BXN2 247 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 MRPL32Q9BYC8 188 aaKnown RBP15.53■□□□□ 0.08
COL9A3-201ENST00000343916 RNASE7Q9H1E1 156 aaKnown RBP15.53■□□□□ 0.08
COL9A3-201ENST00000343916 IL36BQ9NZH7 164 aa15.53■□□□□ 0.08
COL9A3-201ENST00000343916 PRRX1P54821 245 aa15.52■□□□□ 0.08
COL9A3-201ENST00000343916 C10orf113Q5VZT2 155 aa15.52■□□□□ 0.08
COL9A3-201ENST00000343916 LINC00479Q96M42 142 aa15.52■□□□□ 0.08
COL9A3-201ENST00000343916 SNHG12Q9BXW3 62 aa15.52■□□□□ 0.08
COL9A3-201ENST00000343916 POLR3KQ9Y2Y1 108 aaPredicted RBP15.52■□□□□ 0.08
COL9A3-201ENST00000343916 HRNRQ86YZ3 2850 aaPredicted RBP15.52■□□□□ 0.07
COL9A3-201ENST00000343916 SVEP1Q4LDE5 3571 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 GRIFINA4D1Z8 144 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 C22orf46C9J442 243 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 CBLN1P23435 193 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 ASPHD1Q5U4P2 390 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 V9GYV3 84 aa15.52■□□□□ 0.07
COL9A3-201ENST00000343916 A0A1W2PRE2 83 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 CD33P20138 364 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 ADMP35318 185 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 RPL27AP46776 148 aaKnown RBP15.51■□□□□ 0.07
COL9A3-201ENST00000343916 ADORA2A-AS1P86434 159 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 FBXL19-AS1Q494R0 122 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 NHLRC2Q8NBF2 726 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 SIGLEC9Q9Y336 463 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 LY96Q9Y6Y9 160 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 FXYD3Q14802 87 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 MMD2Q8IY49 270 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 TEX45Q8NA69 505 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 TNFRSF14Q92956 283 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 NEU1Q99519 415 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 CHODLQ9H9P2 273 aa15.51■□□□□ 0.07
COL9A3-201ENST00000343916 SPTBN1Q01082 2364 aaKnown RBP15.5■□□□□ 0.07
COL9A3-201ENST00000343916 ORM2P19652 201 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 THAP8Q8NA92 274 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 IGFBPL1Q8WX77 278 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 MS4A10Q96PG2 267 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 FBXL15Q9H469 300 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 ONECUT1Q9UBC0 465 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 NCOR2Q9Y618 2525 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 CRYGBP07316 175 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 LINC00305Q7Z4B0 112 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 RPEQ96AT9 228 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 BTF3L4Q96K17 158 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 PAXXQ9BUH6 204 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 NAGKQ9UJ70 344 aa15.5■□□□□ 0.07
COL9A3-201ENST00000343916 SPINK4O60575 86 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 RAB4BP61018 213 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 LDLRAD2Q5SZI1 272 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 GSX1Q9H4S2 264 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-201ENST00000343916 TNFRSF19Q9NS68 423 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 ZNF705FA8MVS1 300 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-201ENST00000343916 FSTL3O95633 263 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 IGLV2-8P01709 118 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 ZNF705DP0CH99 300 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-201ENST00000343916 ZNF705BP0CI00 300 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-201ENST00000343916 MGST1P10620 155 aaKnown RBP15.49■□□□□ 0.07
COL9A3-201ENST00000343916 G0S2P27469 103 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 BPIFB3P59826 476 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 TIGITQ495A1 244 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 PPP1R27Q86WC6 154 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 OR8I2Q8N0Y5 310 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 OR1L4Q8NGR5 311 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 RNF2Q99496 336 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 PIEZO1Q92508 2521 aa15.49■□□□□ 0.07
COL9A3-201ENST00000343916 CHD8Q9HCK8 2581 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 ASH1LQ9NR48 2969 aaKnown RBP15.48■□□□□ 0.07
COL9A3-201ENST00000343916 FCN1O00602 326 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 COMPP49747 757 aaPredicted RBP15.48■□□□□ 0.07
COL9A3-201ENST00000343916 KLRB1Q12918 225 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 RPEL1Q2QD12 228 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 ST6GALNAC3Q8NDV1 305 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 OR1B1Q8NGR6 318 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 SLC35B1P78383 322 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 OR8B3Q8NGG8 313 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 IGF2BP2-AS1Q96M15 143 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 OR8B2Q96RD0 313 aa15.48■□□□□ 0.07
COL9A3-201ENST00000343916 YPEL3P61236 119 aaPredicted RBP15.47■□□□□ 0.07
COL9A3-201ENST00000343916 C1orf194Q5T5A4 169 aa15.47■□□□□ 0.07
COL9A3-201ENST00000343916 TBX15Q96SF7 602 aa15.47■□□□□ 0.07
COL9A3-201ENST00000343916 CRYGCP07315 174 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 IER3P46695 156 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 SELENOTP62341 195 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 CMTM2Q8TAZ6 248 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 FXYD5Q96DB9 178 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 TRAV34A0A0B4J273 112 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 UCNP55089 124 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 TCL1AP56279 114 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 ARF6P62330 175 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 OR1L6Q8NGR2 347 aa15.46■□□□□ 0.07
COL9A3-201ENST00000343916 AMMECR1Q9Y4X0 333 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms