RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CITED2Q99967 270 aaPredicted RBP12.04□□□□□ -0.48
COL7A1-201ENST00000328333 OCIAD2Q56VL3 154 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 ZAR1Q86SH2 424 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 COL11A2P13942 1736 aaPredicted RBP12.04□□□□□ -0.48
COL7A1-201ENST00000328333 SNAI2O43623 268 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 DUX3Q96PT4 197 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 LHX2P50458 406 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 UPK2O00526 184 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 FOXH1O75593 365 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 PLAURQ03405 335 aa12.04□□□□□ -0.48
COL7A1-201ENST00000328333 WDR87Q6ZQQ6 2873 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 IGKV3D-11A0A0A0MRZ8 115 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 COLCA2A8K830 154 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 MLNRO43193 412 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 CDK2AP2O75956 126 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 IGKV3-11P04433 115 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 RNF115Q9Y4L5 304 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 LINC00312Q9Y6C7 94 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 TFF3Q07654 80 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 IGKV3D-15A0A087WSY6 115 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 IGKV3-15P01624 115 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 ZXDCQ2QGD7 858 aaPredicted RBP12.03□□□□□ -0.48
COL7A1-201ENST00000328333 Q6ZT83 130 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 GFRA4Q9GZZ7 299 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 RNASE7Q9H1E1 156 aaKnown RBP12.03□□□□□ -0.48
COL7A1-201ENST00000328333 VWC2LB2RUY7 222 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 GTSF1LQ9H1H1 148 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 CD5LO43866 347 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 CEACAM1P13688 526 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 MRPL20Q9BYC9 149 aaKnown RBP12.03□□□□□ -0.48
COL7A1-201ENST00000328333 TDGF1P13385 188 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 TMEM155Q4W5P6 130 aa12.03□□□□□ -0.48
COL7A1-201ENST00000328333 HOXD3P31249 432 aaPredicted RBP12.03□□□□□ -0.48
COL7A1-201ENST00000328333 TRBV6-7A0A0A0MS04 114 aa12.02□□□□□ -0.48
COL7A1-201ENST00000328333 ITGB1BP1O14713 200 aa12.02□□□□□ -0.48
COL7A1-201ENST00000328333 POU2AF1Q16633 256 aa12.02□□□□□ -0.48
COL7A1-201ENST00000328333 FGF11Q92914 225 aa12.02□□□□□ -0.48
COL7A1-201ENST00000328333 LOC105371242A0A075B767 164 aa12.02□□□□□ -0.48
COL7A1-201ENST00000328333 C1orf210Q8IVY1 113 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 IGHV1-45A0A0A0MS14 117 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 A0A1W2PRD5 423 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 A0A1W2PRF3 423 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 A0A1W2PRM7 423 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 GFRA3O60609 400 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 REG1AP05451 166 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 IGFBP3P17936 291 aaPredicted RBP12.02□□□□□ -0.49
COL7A1-201ENST00000328333 LINC01590Q5TEZ4 76 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 TMEM54Q969K7 222 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 PIN1P1O15428 100 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 TOMM40O96008 361 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 KIR3DS1Q14943 382 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 C9orf153Q5TBE3 101 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 CST9LQ9H4G1 147 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 KLF4O43474 513 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 C16orf47Q6ZP98 133 aaPredicted RBP12.02□□□□□ -0.49
COL7A1-201ENST00000328333 CITED1Q99966 193 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 LINC00271P0C7V0 271 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 PRSS12P56730 875 aa12.02□□□□□ -0.49
COL7A1-201ENST00000328333 AGFG2O95081 481 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 CD28P10747 220 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 IGFBP2P18065 325 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 BCL6BQ8N143 479 aaPredicted RBP12.01□□□□□ -0.49
COL7A1-201ENST00000328333 ITLN1Q8WWA0 313 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 CTHRC1Q96CG8 243 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 ATRAIDQ6UW56 229 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 PPDPFLQ8WWR9 84 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 JPT2Q9H910 190 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 FOXS1O43638 330 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 A0A0J9YW62 118 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 SNRPCP09234 159 aaKnown RBP12.01□□□□□ -0.49
COL7A1-201ENST00000328333 DTX4Q9Y2E6 619 aa12.01□□□□□ -0.49
COL7A1-201ENST00000328333 HIST1H4AP62805 103 aaKnown RBP12□□□□□ -0.49
COL7A1-201ENST00000328333 PEMTQ9UBM1 199 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 IFITM1P13164 125 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 EXPH5Q8NEV8 1989 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 GUSBP1Q15486 140 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 PCNX3Q9H6A9 2034 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 IGKV1-8A0A0C4DH67 115 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 RNASE4P34096 147 aaKnown RBP12□□□□□ -0.49
COL7A1-201ENST00000328333 EGR4Q05215 589 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 C20orf144Q9BQM9 153 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 SYS1-DBNDD2H3BUS1 97 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 RNF125Q96EQ8 232 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 TOMM7Q9P0U1 55 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 LDLRAD4O15165 306 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 GLRXP35754 106 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 NEUROG3Q9Y4Z2 214 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 C1orf53Q5VUE5 145 aa12□□□□□ -0.49
COL7A1-201ENST00000328333 F8WEM9 126 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 DCTN5Q9BTE1 182 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 DSCAMO60469 2012 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 YPEL1O60688 119 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 YPEL2Q96QA6 119 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 TFPI2P48307 235 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 FHL5Q5TD97 284 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 C1QTNF5Q9BXJ0 243 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 MMP23AO75900 390 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 DUSP14O95147 198 aaKnown RBP11.99□□□□□ -0.49
COL7A1-201ENST00000328333 ZIC4Q8N9L1 334 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 TMEM167AQ8TBQ9 72 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms