RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 OR4C12Q96R67 309 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 FAM103A1Q9BTL3 118 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 OTOGQ6ZRI0 2925 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 ELOA3CA0A087WX78 387 aaPredicted RBP7.96□□□□□ -1.13
HMGB3-201ENST00000325307 SEC14L6B5MCN3 397 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 CD99P14209 185 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 ATP6V0CP27449 155 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 CX3CL1P78423 397 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 PDLIM3Q53GG5 364 aaPredicted RBP7.96□□□□□ -1.13
HMGB3-201ENST00000325307 C9orf139Q6ZV77 190 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 SSMEM1Q8WWF3 244 aa7.96□□□□□ -1.13
HMGB3-201ENST00000325307 LY6G6DO95868 133 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 SULT1A1P50225 295 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 RUNX1Q01196 453 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 EIF5AL1Q6IS14 154 aaKnown RBP7.96□□□□□ -1.14
HMGB3-201ENST00000325307 TMEM182Q6ZP80 229 aaPredicted RBP7.96□□□□□ -1.14
HMGB3-201ENST00000325307 Q71RC1 249 aaPredicted RBP7.96□□□□□ -1.14
HMGB3-201ENST00000325307 HIST3H2BBQ8N257 126 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF479Q96JC4 524 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 HIVEP2P31629 2446 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 BORCS7-ASMTA0A0B4J1R7 106 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 AGPAT2O15120 278 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 NPY1RP25929 384 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 IER3P46695 156 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 BAXQ07812 192 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 ARPC1AQ92747 370 aa7.96□□□□□ -1.14
HMGB3-201ENST00000325307 A6NDX4 124 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 PHOX2AO14813 284 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 RAB11AP62491 216 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 HBG1P69891 147 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 HBG2P69892 147 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF562Q6V9R5 426 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 SIGLECL1Q8N7X8 197 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 C5orf56Q8N8D9 126 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF48Q96MX3 618 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-201ENST00000325307 ATP6V0BQ99437 205 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 RPS10P5Q9NQ39 176 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 CGB1A6NKQ9 187 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 YIF1AO95070 293 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 CRYGCP07315 174 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 AREGP15514 252 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 WT1-ASQ06250 92 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 SLAQ13239 276 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 ARSJQ5FYB0 599 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-201ENST00000325307 NOL4LQ96MY1 436 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-201ENST00000325307 DUX5Q96PT3 197 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 HOXA3O43365 443 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-201ENST00000325307 Q6YL49 198 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 OR10P1Q8NGE3 313 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 PRO1933Q9H354 126 aa7.95□□□□□ -1.14
HMGB3-201ENST00000325307 A0A087WWC5 75 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 C15orf62A8K5M9 175 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 HLA-DRB1P01911 266 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 PF4V1P10720 104 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SSBP2P81877 361 aaPredicted RBP7.94□□□□□ -1.14
HMGB3-201ENST00000325307 TMEM14EPQ6UXP3 125 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 RNASEH2CQ8TDP1 164 aaKnown RBP7.94□□□□□ -1.14
HMGB3-201ENST00000325307 ATP5SQ99766 215 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 HSPB9Q9BQS6 159 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 DOK5Q9P104 306 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 IGHV7-81A0A0B4J1V7 117 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SUB1P53999 127 aaKnown RBP eCLIP7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SLC38A11Q08AI6 406 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF266Q14584 549 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 ISOC2Q96AB3 205 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SETXQ7Z333 2677 aaKnown RBP7.94□□□□□ -1.14
HMGB3-201ENST00000325307 IGLC7A0M8Q6 106 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 DEFA4P12838 97 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 NDPQ00604 133 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SCGB2A2Q13296 93 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 ECSCRQ19T08 205 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 SPSB3Q6PJ21 355 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 FAM24BQ8N5W8 94 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 VPREB3Q9UKI3 123 aa7.94□□□□□ -1.14
HMGB3-201ENST00000325307 MTORP42345 2549 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 SMCO3A2RU48 225 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 TEX22C9J3V5 150 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 SRD5A1P18405 259 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 S100A7P31151 101 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF616Q08AN1 781 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 LFNGQ8NES3 379 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 SMDT1Q9H4I9 107 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 S100A2P29034 98 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 AKR1C3P42330 323 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 CCL20P78556 96 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 SHISA2Q6UWI4 295 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 C19orf35Q6ZS72 473 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 C16orf82Q7Z2V1 217 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 S100A7AQ86SG5 101 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 OR2G3Q8NGZ4 309 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 PINX1Q96BK5 328 aaKnown RBP7.93□□□□□ -1.14
HMGB3-201ENST00000325307 TMUB1Q9BVT8 246 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 MXRA5Q9NR99 2828 aa7.93□□□□□ -1.14
HMGB3-201ENST00000325307 PMS2P5A8MQ11 134 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 RNASE2P10153 161 aaKnown RBP7.92□□□□□ -1.14
HMGB3-201ENST00000325307 CAMLGP49069 296 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 KIAA0141Q14154 515 aaPredicted RBP7.92□□□□□ -1.14
HMGB3-201ENST00000325307 RNF2Q99496 336 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 P2RX4Q99571 388 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 ATP6V0E1O15342 81 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms