RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PAX2Q02962 417 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 VKORC1Q9BQB6 163 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 A0A087X0K7 114 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 B9A039 149 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 UBE2L6O14933 153 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 NPSP0C0P6 89 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 RNFT1Q5M7Z0 435 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 OR5AN1Q8NGI8 311 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 CST9LQ9H4G1 147 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 LY96Q9Y6Y9 160 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 COL4A6Q14031 1691 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 hDV102S1A0JD36 115 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 GAGE1Q13065 139 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 CLEC2AQ6UVW9 174 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 BCL6BQ8N143 479 aaPredicted RBP9.57□□□□□ -0.88
VPS39-201ENST00000318006 C9orf106Q8NAJ2 232 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 SMPXQ9UHP9 88 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 RFNGQ9Y644 331 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 PTPRDP23468 1912 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 FREM3P0C091 2139 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 IGKV3D-15A0A087WSY6 115 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 IGKV3-15P01624 115 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 CLPSP04118 112 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 NPPCP23582 126 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 C10orf91Q5T1B1 145 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 C15orf61A6NNL5 157 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 CD59P13987 128 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 GUSBP1Q15486 140 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 LINC01559Q495D7 138 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 NMSQ5H8A3 153 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 FAM159AQ6UWV7 190 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 SCN8AQ9UQD0 1980 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 TCF20Q9UGU0 1960 aaKnown RBP9.57□□□□□ -0.88
VPS39-201ENST00000318006 IQCF6A8MYZ5 107 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 RAMP3O60896 148 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 CELA3BP08861 270 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 ASIPP42127 132 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 FAM57AQ8TBR7 257 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 ABHD17AQ96GS6 310 aa9.57□□□□□ -0.88
VPS39-201ENST00000318006 PINLYPA6NC86 204 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 SRSF7Q16629 238 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS39-201ENST00000318006 ZIC4Q8N9L1 334 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 MOB4Q9Y3A3 225 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 PYYP10082 97 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 HGFACQ04756 655 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 FAM90A9PA6NNJ1 464 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 SUMO2P61956 95 aaKnown RBP9.56□□□□□ -0.88
VPS39-201ENST00000318006 TREML4Q6UXN2 200 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 KLHDC3Q9BQ90 382 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 GBF1Q92538 1859 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 SYS1-DBNDD2H3BUS1 97 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 UPK2O00526 184 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 CSRP1P21291 193 aaKnown RBP9.56□□□□□ -0.88
VPS39-201ENST00000318006 APOBEC3AP31941 199 aaPredicted RBP9.56□□□□□ -0.88
VPS39-201ENST00000318006 SPSB3Q6PJ21 355 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 GGTLC1Q9BX51 225 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 CLEC7AQ9BXN2 247 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 SELENOKQ9Y6D0 94 aa9.56□□□□□ -0.88
VPS39-201ENST00000318006 KIR3DS1Q14943 382 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 NUP37Q8NFH4 326 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 SRSF1Q07955 248 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS39-201ENST00000318006 LINC01560Q8TB33 94 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 DYNLRB2Q8TF09 96 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 ZNF815PA8K554 130 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 TM4SF5O14894 197 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 IGHV4-39P01824 125 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 TMEM14EPQ6UXP3 125 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 ZNF497Q6ZNH5 498 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 SLC25A48Q6ZT89 311 aaKnown RBP9.55□□□□□ -0.88
VPS39-201ENST00000318006 OR13C6PQ8NH95 151 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 DDB2Q92466 427 aa9.55□□□□□ -0.88
VPS39-201ENST00000318006 FABP5P3A8MUU1 101 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 CRYGSP22914 178 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 CD69Q07108 199 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 Q0VG73 95 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 DCTN5Q9BTE1 182 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 THADAQ6YHU6 1953 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 H7C1H1 209 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 KIR3DL3Q8N743 410 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 TCRBV4S1A1TA0A5B7 111 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 PFN1P07737 140 aaKnown RBP9.54□□□□□ -0.88
VPS39-201ENST00000318006 FAM201AQ5SY85 155 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 FOXA2Q9Y261 457 aaPredicted RBP9.54□□□□□ -0.88
VPS39-201ENST00000318006 YPEL1O60688 119 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 SNRNP200O75643 2136 aaKnown RBP9.54□□□□□ -0.88
VPS39-201ENST00000318006 ESPL1Q14674 2120 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 GGNQ86UU5 652 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 FAM90A1Q86YD7 464 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 YPEL2Q96QA6 119 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 PSG8Q9UQ74 426 aa9.54□□□□□ -0.88
VPS39-201ENST00000318006 MDC1Q14676 2089 aaKnown RBP9.54□□□□□ -0.88
VPS39-201ENST00000318006 LOC105371242A0A075B767 164 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 TRAV5A0A0B4J249 113 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 IGHV3-35A0A0C4DH35 117 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 OR9G9P0C7N8 305 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 PF4V1P10720 104 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 TDGF1P13385 188 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 FAM216BQ8N7L0 139 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 ORMDL2Q53FV1 153 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 FGFBP3Q8TAT2 258 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms