RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 TOMM40O96008 361 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 SRSF12Q8WXF0 261 aaKnown RBP7.36□□□□□ -1.23
COL6A5-202ENST00000312481 AMBPP02760 352 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 COLCA1Q6ZS62 124 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 MAFAQ8NHW3 353 aaPredicted RBP7.36□□□□□ -1.23
COL6A5-202ENST00000312481 GFI1Q99684 422 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 MEX3AA1L020 520 aaKnown RBP7.36□□□□□ -1.23
COL6A5-202ENST00000312481 MSGN1A6NI15 193 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 PLEKHB2Q96CS7 222 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 MRAP2Q96G30 205 aa7.36□□□□□ -1.23
COL6A5-202ENST00000312481 NBR2O15453 112 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 SERF1AO75920 110 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 IGHV2-70P01814 119 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 LINC00477Q96M19 166 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 IGHV2OR16-5A0A0B4J2B6 119 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 FAM181BA6NEQ2 426 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 GATA3P23771 443 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 POU2AF1Q16633 256 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 RNF182Q8N6D2 247 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 RTN4RQ9BZR6 473 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 YPEL3P61236 119 aaPredicted RBP7.35□□□□□ -1.23
COL6A5-202ENST00000312481 LAGE3Q14657 143 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 WFDC6Q9BQY6 131 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 TMEM14BQ9NUH8 114 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 CELA2BP08218 269 aaPredicted RBP7.35□□□□□ -1.23
COL6A5-202ENST00000312481 LPAL2Q16609 132 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 TMEM101Q96IK0 257 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 F8W1H4 67 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 DLEU1O43261 78 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 INAFM2P0DMQ5 153 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 SLC25A16P16260 332 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 ABHD12Q8N2K0 398 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 DLX4Q92988 240 aaPredicted RBP7.35□□□□□ -1.23
COL6A5-202ENST00000312481 NABP1Q96AH0 204 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 Q9H3A6 140 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 PNRC2Q9NPJ4 139 aaKnown RBP7.35□□□□□ -1.23
COL6A5-202ENST00000312481 TRGV11A0A075B6L2 103 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 IGHV1-24A0A0C4DH33 117 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 SHISA8B8ZZ34 492 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 F12P00748 615 aaPredicted RBP7.35□□□□□ -1.23
COL6A5-202ENST00000312481 PPP1R27Q86WC6 154 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 LINC00311Q8N616 119 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 SRXN1Q9BYN0 137 aa7.35□□□□□ -1.23
COL6A5-202ENST00000312481 IGKV1-9A0A0C4DH69 117 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 ZFP36L1Q07352 338 aaKnown RBP7.34□□□□□ -1.23
COL6A5-202ENST00000312481 PDCD1Q15116 288 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 OR2K2Q8NGT1 345 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 TMEM133Q9H2Q1 129 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 H0YIZ8 118 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.34□□□□□ -1.23
COL6A5-202ENST00000312481 GGTLC1Q9BX51 225 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 RFNGQ9Y644 331 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 TRBV20OR9-2A0A075B6H5 130 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 SAA2-SAA4A0A096LPE2 208 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 PPIAL4CA0A0B4J2A2 164 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 PPIAL4GP0DN37 164 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 TRAV24A0A0B4J272 114 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 DYNLRB2Q8TF09 96 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 SPCS1Q9Y6A9 102 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 TMEM167AQ8TBQ9 72 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 RPUSD1Q9UJJ7 312 aaKnown RBP7.34□□□□□ -1.23
COL6A5-202ENST00000312481 C17orf100A8MU93 164 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 OR10W1Q8NGF6 305 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 SCGB3A1Q96QR1 104 aa7.34□□□□□ -1.23
COL6A5-202ENST00000312481 IGLV3-1P01715 115 aa7.34□□□□□ -1.24
COL6A5-202ENST00000312481 SP9P0CG40 484 aa7.34□□□□□ -1.24
COL6A5-202ENST00000312481 IFI27P40305 119 aaPredicted RBP7.34□□□□□ -1.24
COL6A5-202ENST00000312481 CXorf67Q86X51 503 aaPredicted RBP7.34□□□□□ -1.24
COL6A5-202ENST00000312481 TMEM74BQ9NUR3 256 aa7.34□□□□□ -1.24
COL6A5-202ENST00000312481 LOC105371242A0A075B767 164 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 UBE2L6O14933 153 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 TREML4Q6UXN2 200 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 GOLT1AQ6ZVE7 132 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RNF125Q96EQ8 232 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 ADIPOQQ15848 244 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 C9orf139Q6ZV77 190 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 DDB2Q92466 427 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 PGLYRP4Q96LB8 373 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 MSL2Q9HCI7 577 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 FAM223BA6NKX1 122 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 WDR82Q6UXN9 313 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 Q6ZVH6 145 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 FAM223AQ8IWN6 122 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RBMY1BA6NDE4 496 aaKnown RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RBMY1EA6NEQ0 496 aaKnown RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 NTN3O00634 580 aaPredicted RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RBMY1DP0C7P1 496 aaKnown RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RBMY1A1P0DJD3 496 aaKnown RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RBMY1CP0DJD4 496 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 RTP5Q14D33 572 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 ZNF474Q6S9Z5 364 aaPredicted RBP7.33□□□□□ -1.24
COL6A5-202ENST00000312481 Q8TCH9 128 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 INS-IGF2F8WCM5 200 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 LINC01565O15544 149 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 C10orf126Q8N4M7 172 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 OR11H6Q8NGC7 330 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 NCOR2Q9Y618 2525 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 IGHV3-43A0A0B4J1X8 118 aa7.33□□□□□ -1.24
COL6A5-202ENST00000312481 IGHV3-43DP0DP04 118 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms