RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ABHD17AQ96GS6 310 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 IGHV3-64A0A075B6Q5 118 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 PRR32B1ATL7 298 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 UMODP07911 640 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 COLCA2A8K830 154 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 KLF17Q5JT82 389 aaPredicted RBP11.61□□□□□ -0.55
CSPG4-201ENST00000308508 C19orf48Q6RUI8 117 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 SPANXDQ9BXN6 97 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 STHQ8IWL8 128 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 SLC22A18ASQ8N1D0 253 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 DOCK4Q8N1I0 1966 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 GTSCR1Q86UQ5 136 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 KLF12Q9Y4X4 402 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 ZXDCQ2QGD7 858 aaPredicted RBP11.61□□□□□ -0.55
CSPG4-201ENST00000308508 MYO7BQ6PIF6 2116 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 MED12Q93074 2177 aa11.61□□□□□ -0.55
CSPG4-201ENST00000308508 EFEMP2O95967 443 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 COX6A1P12074 109 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 ZIC4Q8N9L1 334 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 KIR3DS1Q14943 382 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 C9orf153Q5TBE3 101 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 VGLL1Q99990 258 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 PHF3Q92576 2039 aaKnown RBP11.6□□□□□ -0.55
CSPG4-201ENST00000308508 CADP27708 2225 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 TRBV6-7A0A0A0MS04 114 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 A0A1W2PQF6 199 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 SHISA3A0PJX4 238 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 UPK2O00526 184 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 YPEL1O60688 119 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 FGF11Q92914 225 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 YPEL2Q96QA6 119 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 C1QTNF5Q9BXJ0 243 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 CXCL1P09341 107 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 BTCP35070 178 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 RPRMLQ8N4K4 120 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 OR13A1Q8NGR1 328 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 CT83Q5H943 113 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 SPSB2Q99619 263 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 A0A087X0K7 114 aa11.6□□□□□ -0.55
CSPG4-201ENST00000308508 SPTA1P02549 2419 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 LEPROTO15243 131 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 SMIM10L1P0DMW3 83 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 MPZP25189 248 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 SMIM10Q96HG1 83 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 C8orf46Q8TAG6 207 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 NBR2O15453 112 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 IGFBP3P17936 291 aaPredicted RBP11.59□□□□□ -0.55
CSPG4-201ENST00000308508 FOXL2P58012 376 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 PAX4O43316 350 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 PSG1P11464 419 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 C1orf162Q8NEQ5 155 aaPredicted RBP11.59□□□□□ -0.55
CSPG4-201ENST00000308508 SAA2-SAA4A0A096LPE2 208 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 SAA2P0DJI9 122 aaPredicted RBP11.59□□□□□ -0.55
CSPG4-201ENST00000308508 CCL1P22362 96 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 DTX1Q86Y01 620 aa11.59□□□□□ -0.55
CSPG4-201ENST00000308508 TRAV1-1A0A0B4J248 108 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 RAMP3O60896 148 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 CD55P08174 381 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 LY6G6FQ5SQ64 297 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 CRIM1Q9NZV1 1036 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 ADAMTSL3P82987 1691 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 DOCK3Q8IZD9 2030 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 TRGV4A0A0C4DH28 118 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 C5orf67F2Z3F1 127 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 GLMPQ8WWB7 406 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 D6R8Y8 96 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 PYYP10082 97 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 SDK2Q58EX2 2172 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 RALGAPA2Q2PPJ7 1873 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 SPAARA0A1B0GVQ0 90 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 LINC00271P0C7V0 271 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 ADAMTSL5Q6ZMM2 481 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 DEPPQ9NTK1 212 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 ADAMTSL1Q8N6G6 1762 aa11.58□□□□□ -0.56
CSPG4-201ENST00000308508 A0A0U1RRA0 63 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 MLNRO43193 412 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 LHX2P50458 406 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 NPC2P61916 151 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 ZNF497Q6ZNH5 498 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 PTPRDP23468 1912 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 HEATR5AQ86XA9 2040 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 IGHV3OR16-10A0A075B7F0 116 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 DOCK6Q96HP0 2047 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 HTN3P15516 51 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 REPIN1Q9BWE0 567 aaKnown RBP11.57□□□□□ -0.56
CSPG4-201ENST00000308508 NCOR1P1Q9H4R4 102 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 C1orf53Q5VUE5 145 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 GAGE2AQ6NT46 116 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 NEU4Q8WWR8 484 aaPredicted RBP11.57□□□□□ -0.56
CSPG4-201ENST00000308508 NAA38Q9BRA0 125 aaKnown RBP11.57□□□□□ -0.56
CSPG4-201ENST00000308508 MRPL27Q9P0M9 148 aaKnown RBP11.57□□□□□ -0.56
CSPG4-201ENST00000308508 NEUROG3Q9Y4Z2 214 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 OVOL1O14753 267 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 SMRP1Q8NCR6 262 aa11.57□□□□□ -0.56
CSPG4-201ENST00000308508 IGHV3OR16-8A0A075B7F1 116 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 CD5LO43866 347 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 MPV17L2Q567V2 206 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 hDV102S1A0JD36 115 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 F8WEM9 126 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 OR9G9P0C7N8 305 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms