RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TM4SF20Q53R12 229 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 MEGF9Q9H1U4 602 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 A0A1W2PS18 150 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 F2RL2O00254 374 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 IGKV1D-33P01593 117 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 IGKV1-33P01594 117 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 SAMD13Q5VXD3 122 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 FBXL7Q9UJT9 491 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 TRAV5A0A0B4J249 113 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 SS18L1O75177 396 aaPredicted RBP15.96■□□□□ 0.15
USP48-201ENST00000308271 HBDP02042 147 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 NPSP0C0P6 89 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 PRDM6Q9NQX0 595 aa15.96■□□□□ 0.15
USP48-201ENST00000308271 Q6ZWC4 215 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 HSD52Q0P140 79 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 SRRM5B3KS81 715 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 ZFP36L1Q07352 338 aaKnown RBP15.95■□□□□ 0.14
USP48-201ENST00000308271 NUP35Q8NFH5 326 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 OR5AN1Q8NGI8 311 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 IGKV1-39P01597 117 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 IGKV1D-39P04432 117 aa15.95■□□□□ 0.14
USP48-201ENST00000308271 ATP1A1-AS1Q5TC04 95 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 TRAV3A0A0B4J244 114 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 FNDC10F2Z333 226 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 PYGO2Q9BRQ0 406 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 METTL26Q96S19 204 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 FER1L6-AS1Q8NA97 138 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 OR9G4Q8NGQ1 327 aa15.94■□□□□ 0.14
USP48-201ENST00000308271 PPIAL4CA0A0B4J2A2 164 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 A0A1B0GWB2 263 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 PPIAL4GP0DN37 164 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 IGLC2P0DOY2 106 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 IGLC3P0DOY3 106 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 COQ2Q96H96 371 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 LOXL4Q96JB6 756 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 FOXC2Q99958 501 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 SYS1-DBNDD2H3BUS1 97 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.93■□□□□ 0.14
USP48-201ENST00000308271 SLC25A48Q6ZT89 311 aaKnown RBP15.93■□□□□ 0.14
USP48-201ENST00000308271 C16orf92Q96LL3 132 aa15.93■□□□□ 0.14
USP48-201ENST00000308271 DIDO1Q9BTC0 2240 aaKnown RBP15.93■□□□□ 0.14
USP48-201ENST00000308271 DGAT2L7PQ6IED9 249 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 HAPLN4Q86UW8 402 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 IL18BPO95998 194 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 OR10J6PQ8NGY7 276 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 CACNG7P62955 275 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 FBXL15Q9H469 300 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 TMEM190Q8WZ59 177 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 KLK15Q9H2R5 256 aa15.92■□□□□ 0.14
USP48-201ENST00000308271 COX6CP09669 75 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 SSC4DQ8WTU2 575 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 PHLDA3Q9Y5J5 127 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 PI4KAP42356 2102 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 DENND4CQ5VZ89 1909 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 OR10W1Q8NGF6 305 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 hDV102S1A0JD36 115 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 MMP23AO75900 390 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 TEX43Q6ZNM6 134 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 RPUSD1Q9UJJ7 312 aaKnown RBP15.91■□□□□ 0.14
USP48-201ENST00000308271 PSG8Q9UQ74 426 aa15.91■□□□□ 0.14
USP48-201ENST00000308271 IFI27L1Q96BM0 104 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 DOCK8Q8NF50 2099 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 CGB1A6NKQ9 187 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 CD5LO43866 347 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 MRPL16Q9NX20 251 aaKnown RBP15.9■□□□□ 0.14
USP48-201ENST00000308271 IGKV3-7A0A075B6H7 116 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 MUC21A0A0G2JKD1 596 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 MUC21A0A140T8X8 626 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 RIPPLY3P57055 190 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 MUC21Q5SSG8 566 aa15.9■□□□□ 0.14
USP48-201ENST00000308271 NTN3O00634 580 aaPredicted RBP15.89■□□□□ 0.13
USP48-201ENST00000308271 PPBPP02775 128 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 WFDC3Q8IUB2 231 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 FRMPD3Q5JV73 1810 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 CCL3L1P16619 93 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 LINC00205P59089 165 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 C9orf106Q8NAJ2 232 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 C18orf32Q8TCD1 76 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 NHP2Q9NX24 153 aaKnown RBP15.89■□□□□ 0.13
USP48-201ENST00000308271 FAM106CPP0CH98 169 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 ZNF318Q5VUA4 2279 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 ALPK3Q96L96 1907 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 KIR2DL5BA0A0G2JN68 375 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 KIR2DL5BA0A0G2JPC4 375 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 A0A1B0GWJ7 208 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 TDGF1P13385 188 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 KIR2DL5AQ8N109 375 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 CD177Q8N6Q3 437 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 FDCSPQ8NFU4 85 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 C8orf46Q8TAG6 207 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 ZNF71Q9NQZ8 489 aaPredicted RBP15.89■□□□□ 0.13
USP48-201ENST00000308271 METRNQ9UJH8 293 aa15.89■□□□□ 0.13
USP48-201ENST00000308271 SPAARA0A1B0GVQ0 90 aa15.88■□□□□ 0.13
USP48-201ENST00000308271 SNCGO76070 127 aa15.88■□□□□ 0.13
USP48-201ENST00000308271 KHDC1LQ5JSQ8 128 aa15.88■□□□□ 0.13
USP48-201ENST00000308271 ZNF883P0CG24 379 aa15.88■□□□□ 0.13
USP48-201ENST00000308271 NXT2Q9NPJ8 142 aaKnown RBP15.88■□□□□ 0.13
USP48-201ENST00000308271 CACNA1BQ00975 2339 aa15.88■□□□□ 0.13
USP48-201ENST00000308271 NOTCH4Q99466 2003 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms