RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SRSF12Q8WXF0 261 aaKnown RBP11.38□□□□□ -0.59
C9orf3-202ENST00000297979 SLC35B3Q9H1N7 401 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 TACC2O95359 2948 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 FCN1O00602 326 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 YIF1AO95070 293 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 AREGP15514 252 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 ICAM4Q14773 271 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 SLC35E1Q96K37 410 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 WNK2Q9Y3S1 2297 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 LOC102723971A0A1B0GUV8 181 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 SEC14L6B5MCN3 397 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 TEX22C9J3V5 150 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 SAA4P35542 130 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 RPL29P47914 159 aaKnown RBP11.37□□□□□ -0.59
C9orf3-202ENST00000297979 PTTG1IPP53801 180 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 MLANAQ16655 118 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 KHDC3LQ587J8 217 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 GCSAMLQ5JQS6 135 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 STPG3Q8N7X2 389 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 OR2D3Q8NGH3 330 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 NDUFAF3Q9BU61 184 aa11.37□□□□□ -0.59
C9orf3-202ENST00000297979 FBLL1A6NHQ2 334 aaKnown RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 HMGB3O15347 200 aaKnown RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 EBI3Q14213 229 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 FBLN7Q53RD9 439 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 GLMPQ8WWB7 406 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 ZFP92A6NM28 416 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 NPFFO15130 113 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PLXNB1O43157 2135 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 IFNA1P01562 189 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 HSPB1P04792 205 aaKnown RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 BCL2P10415 239 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 DEFA4P12838 97 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PVRIGQ6DKI7 326 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PET117Q6UWS5 81 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 Q8N6K4 173 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 RXFP4Q8TDU9 374 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 AJUBAQ96IF1 538 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 SRSF8Q9BRL6 282 aaKnown RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 IGKV1OR2-108A0A075B7D4 117 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 A0A1W2PPV4 95 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 CNIH1O95406 144 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 APELAP0DMC3 54 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PRR20EP86478 221 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PRR20CP86479 221 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PRR20DP86480 221 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PRR20BP86481 221 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 PRR20AP86496 221 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 DAZAP1Q96EP5 407 aaKnown RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 SNHG12Q9BXW3 62 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 FNDC4Q9H6D8 234 aaPredicted RBP11.36□□□□□ -0.59
C9orf3-202ENST00000297979 TNFRSF18Q9Y5U5 241 aa11.36□□□□□ -0.59
C9orf3-202ENST00000297979 MED13LQ71F56 2210 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 ELOA3CA0A087WX78 387 aaPredicted RBP11.35□□□□□ -0.59
C9orf3-202ENST00000297979 CENPVL3A0A0U1RRI6 287 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 PMS2P11Q13670 270 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 OR1P1Q8NH06 330 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 OR2T6Q8NHC8 308 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 SLC45A2Q9UMX9 530 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 NAV3Q8IVL0 2385 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 SRP19P09132 144 aaKnown RBP11.35□□□□□ -0.59
C9orf3-202ENST00000297979 CRYBA4P53673 196 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 CLEC12BQ2HXU8 276 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 ACY3Q96HD9 319 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 ABCA2Q9BZC7 2435 aa11.35□□□□□ -0.59
C9orf3-202ENST00000297979 SLC25A16P16260 332 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 OR10J1P30954 320 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 F11RQ9Y624 299 aaKnown RBP11.34□□□□□ -0.59
C9orf3-202ENST00000297979 CORTO00230 105 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 MSMBP08118 114 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 FAM106CPP0CH98 169 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 COL8A1P27658 744 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 BRS3P32247 399 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 MFAP2P55001 183 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 PIP4P2Q8N4L2 257 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 ABHD5Q8WTS1 349 aa11.34□□□□□ -0.59
C9orf3-202ENST00000297979 NCBP2LA6PVI3 153 aaKnown RBP11.33□□□□□ -0.6
C9orf3-202ENST00000297979 LINC00869P0C866 280 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 FXYD3Q14802 87 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 SOHLH1Q5JUK2 328 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 CBLN2Q8IUK8 224 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 VAX2Q9UIW0 290 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 FAM208BQ5VWN6 2430 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 C19orf35Q6ZS72 473 aa11.33□□□□□ -0.6
C9orf3-202ENST00000297979 ASH1LQ9NR48 2969 aaKnown RBP11.33□□□□□ -0.6
C9orf3-202ENST00000297979 A8MWP6 167 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 NPBWR1P48145 328 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 TMEM249Q2WGJ8 235 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 NPIPB3Q92617 1050 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 MANBALQ9NQG1 85 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 UTP20O75691 2785 aaKnown RBP11.32□□□□□ -0.6
C9orf3-202ENST00000297979 IGHV1-69DA0A0B4J2H0 117 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 IGHV1-69P01742 117 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 RHOBP62745 196 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 CYB561D1Q8N8Q1 229 aa11.32□□□□□ -0.6
C9orf3-202ENST00000297979 TRAV40A0A0B4J280 105 aa11.31□□□□□ -0.6
C9orf3-202ENST00000297979 IGHV3-48P01763 117 aa11.31□□□□□ -0.6
C9orf3-202ENST00000297979 RND2P52198 227 aa11.31□□□□□ -0.6
C9orf3-202ENST00000297979 FAM120AOSQ5T036 256 aa11.31□□□□□ -0.6
C9orf3-202ENST00000297979 ZNF562Q6V9R5 426 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms