RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ZNF585BQ52M93 769 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 SCN8AQ9UQD0 1980 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 RNF222A6NCQ9 220 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 NAPSAO96009 420 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 CD55P08174 381 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 STAG3L2P0CL84 134 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 LILRA1O75019 489 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 FOLR2P14207 255 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 LRTM2Q8N967 370 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 FER1L6-AS1Q8NA97 138 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 OR10W1Q8NGF6 305 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 MUC21Q5SSG8 566 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 LINC01356Q8N9X3 169 aa15.28■□□□□ 0.04
PCDH1-201ENST00000287008 MUC21A0A0G2JKD1 596 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 MUC21A0A140T8X8 626 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 C5orf63A6NC05 138 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 CD7P09564 240 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 SRD5A1P18405 259 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 HGFACQ04756 655 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 GFI1Q99684 422 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 WDR83OSQ9Y284 106 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 CLDN16Q9Y5I7 305 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 C5orf64Q2M2E5 130 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 PET117Q6UWS5 81 aa15.27■□□□□ 0.04
PCDH1-201ENST00000287008 PRELID3AQ96N28 172 aa15.27■□□□□ 0.03
PCDH1-201ENST00000287008 CBLN1P23435 193 aa15.27■□□□□ 0.03
PCDH1-201ENST00000287008 MPZP25189 248 aa15.26■□□□□ 0.03
PCDH1-201ENST00000287008 SLC25A48Q6ZT89 311 aaKnown RBP15.26■□□□□ 0.03
PCDH1-201ENST00000287008 COPS9Q8WXC6 57 aa15.26■□□□□ 0.03
PCDH1-201ENST00000287008 GAFA1Q96PS6 74 aa15.26■□□□□ 0.03
PCDH1-201ENST00000287008 RPP21Q9H633 154 aaKnown RBP15.26■□□□□ 0.03
PCDH1-201ENST00000287008 FAM71F2Q6NXP2 309 aa15.26■□□□□ 0.03
PCDH1-201ENST00000287008 PIP4P1Q86T03 277 aa15.26■□□□□ 0.03
PCDH1-201ENST00000287008 TP53BP1Q12888 1972 aaPredicted RBP15.26■□□□□ 0.03
PCDH1-201ENST00000287008 SLC17A3O00476 420 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 SAP30O75446 220 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 RPRMLQ8N4K4 120 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 PRTN3P24158 256 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 CMC4P56277 68 aaPredicted RBP15.25■□□□□ 0.03
PCDH1-201ENST00000287008 ZMAT5Q9UDW3 170 aaKnown RBP15.25■□□□□ 0.03
PCDH1-201ENST00000287008 TBL2Q9Y4P3 447 aaKnown RBP15.25■□□□□ 0.03
PCDH1-201ENST00000287008 FOXL2NBQ6ZUU3 175 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 RNF223E7ERA6 249 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 H7C2G1 150 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 ZNF383Q8NA42 475 aa15.25■□□□□ 0.03
PCDH1-201ENST00000287008 TRAV21A0A0B4J279 112 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 A0A1W2PRE2 83 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 C7orf71A4D174 169 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 LEPP41159 167 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 MBNL3Q9NUK0 354 aaKnown RBP15.24■□□□□ 0.03
PCDH1-201ENST00000287008 SOX21Q9Y651 276 aaPredicted RBP15.24■□□□□ 0.03
PCDH1-201ENST00000287008 IGKV1D-17A0A075B6S4 117 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 IL36BQ9NZH7 164 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 FANCMQ8IYD8 2048 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 SRP19P09132 144 aaKnown RBP15.24■□□□□ 0.03
PCDH1-201ENST00000287008 SPSB3Q6PJ21 355 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 RNF126Q9BV68 326 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 A0A1B0GW15 77 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 H3BVH4 76 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 PYYP10082 97 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 TEX38Q6PEX7 206 aa15.24■□□□□ 0.03
PCDH1-201ENST00000287008 ZNF25P17030 456 aaPredicted RBP15.23■□□□□ 0.03
PCDH1-201ENST00000287008 C3orf36Q3SXR2 165 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 TMEM170BQ5T4T1 132 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 OR11H12B2RN74 326 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 CD33P20138 364 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 LHFPL1Q86WI0 220 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 OR11H1Q8NG94 326 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 OR11H2Q8NH07 326 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 BUB1B-PAK6H3BSN5 160 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 LBHQ53QV2 105 aaPredicted RBP15.23■□□□□ 0.03
PCDH1-201ENST00000287008 LYPD2Q6UXB3 125 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 BIVMQ86UB2 503 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 EPDR1Q9UM22 224 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 MSMBP08118 114 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 GATA3P23771 443 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 CEACAM8P31997 349 aaPredicted RBP15.23■□□□□ 0.03
PCDH1-201ENST00000287008 PSMG4Q5JS54 123 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 ERASQ7Z444 233 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 COQ2Q96H96 371 aa15.23■□□□□ 0.03
PCDH1-201ENST00000287008 A6NNC1 897 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 Q5PR19 223 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 LDLRAD4O15165 306 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 BTCP35070 178 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 CCL20P78556 96 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 HIST1H4GQ99525 98 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 MGAMO43451 1857 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 ANKHD1Q8IWZ3 2542 aaKnown RBP15.22■□□□□ 0.03
PCDH1-201ENST00000287008 A0A1B0GWJ7 208 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 PKIAP61925 76 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 FBLN7Q53RD9 439 aa15.22■□□□□ 0.03
PCDH1-201ENST00000287008 CD5P06127 495 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 SAA4P35542 130 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 LOC107984156A0A0G2JMH3 177 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 OVOL1O14753 267 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 ARL17AQ8IVW1 177 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 PSG8Q9UQ74 426 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 GNG5P63218 68 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 EFNB3Q15768 340 aa15.21■□□□□ 0.03
PCDH1-201ENST00000287008 Q6P435 159 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms