RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 UBE2E1P51965 193 aa11.3□□□□□ -0.6
SIX4-201ENST00000216513 IGKV1-9A0A0C4DH69 117 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 B4DEV8 164 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 SEC11BP0C7V7 166 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 ZNF600Q6ZNG1 722 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 BEND2Q8NDZ0 799 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 SPOCK3Q9BQ16 436 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 PRSS2P07478 247 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 C10orf55Q5SWW7 151 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 SAMD13Q5VXD3 122 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 IGKV1D-13A0A0B4J2D9 117 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 IGKV1-13P0DP09 117 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 SRIP30626 198 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 CFHR2P36980 270 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 ATP5G3P48201 142 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 NDPQ00604 133 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 KIF26AQ9ULI4 1882 aaPredicted RBP11.29□□□□□ -0.6
SIX4-201ENST00000216513 SCO2A0A1W2PP80 73 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 OR5AN1Q8NGI8 311 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.29□□□□□ -0.6
SIX4-201ENST00000216513 PGPEP1LA6NFU8 196 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 DUSP14O95147 198 aaKnown RBP11.29□□□□□ -0.6
SIX4-201ENST00000216513 ASCL4Q6XD76 172 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 BIVMQ86UB2 503 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 TMEM101Q96IK0 257 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 PARLQ9H300 379 aa11.29□□□□□ -0.6
SIX4-201ENST00000216513 CD7P09564 240 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 TSC2P49815 1807 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 IGKV1D-17A0A075B6S4 117 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 IGKV1D-8A0A087WSZ0 117 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 ASIPP42127 132 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 SPATA45Q537H7 98 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 FBLIM1Q8WUP2 373 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 ZNF257Q9Y2Q1 563 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 NUP210Q8TEM1 1887 aaPredicted RBP11.28□□□□□ -0.6
SIX4-201ENST00000216513 PKDREJQ9NTG1 2253 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 PCNX1Q96RV3 2341 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 LEPP41159 167 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 GCSAMLQ5JQS6 135 aa11.28□□□□□ -0.6
SIX4-201ENST00000216513 MCRIP2Q9BUT9 160 aaKnown RBP11.28□□□□□ -0.6
SIX4-201ENST00000216513 C5orf64Q2M2E5 130 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 OR10W1Q8NGF6 305 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 OR9G4Q8NGQ1 327 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 PMCHL2Q9BQD1 86 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 A8MWL6 223 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 ZNF688P0C7X2 276 aa11.27□□□□□ -0.6
SIX4-201ENST00000216513 CRPP02741 224 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 FAM120AOSQ5T036 256 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 TCF23Q7RTU1 214 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 C18orf12Q96KH6 178 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 RTBDNQ9BSG5 229 aaPredicted RBP11.27□□□□□ -0.61
SIX4-201ENST00000216513 SDF2L1Q9HCN8 221 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 ZNF407Q9C0G0 2248 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 DNLZQ5SXM8 178 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 KIF26BQ2KJY2 2108 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 NAT1P18440 290 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 RPS11P62280 158 aaKnown RBP eCLIP11.27□□□□□ -0.61
SIX4-201ENST00000216513 SRSF4Q08170 494 aaKnown RBP11.27□□□□□ -0.61
SIX4-201ENST00000216513 SFTA2Q6UW10 78 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 SIGLEC15Q6ZMC9 328 aa11.27□□□□□ -0.61
SIX4-201ENST00000216513 MIR17HGQ75NE6 70 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 ZGRF1Q86YA3 2104 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 ZFP30Q9Y2G7 519 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 OTOGLQ3ZCN5 2332 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 A0A0A6YYD4 124 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 LINC01619G3V211 115 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 UCP3P55916 312 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 IL6RP08887 468 aaPredicted RBP11.26□□□□□ -0.61
SIX4-201ENST00000216513 MEF2BQ02080 365 aaPredicted RBP11.26□□□□□ -0.61
SIX4-201ENST00000216513 PMCHL1Q16048 86 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 DEFB112Q30KQ8 113 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 RNASEH2CQ8TDP1 164 aaKnown RBP11.26□□□□□ -0.61
SIX4-201ENST00000216513 FOXC2Q99958 501 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 ZNRD1Q9P1U0 126 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 PEF1Q9UBV8 284 aaKnown RBP11.26□□□□□ -0.61
SIX4-201ENST00000216513 IGHV4-61A0A0C4DH41 118 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 LINC00862A6NCI5 91 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 A6NDN8 102 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 DOPEY2Q9Y3R5 2298 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 EFNB3Q15768 340 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 ZNF362Q5T0B9 420 aaPredicted RBP11.26□□□□□ -0.61
SIX4-201ENST00000216513 RNF125Q96EQ8 232 aa11.26□□□□□ -0.61
SIX4-201ENST00000216513 TRBV6-7A0A0A0MS04 114 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 F8VVB4 439 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 F8VWA3 439 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 CENPWQ5EE01 88 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 IGKV1-12A0A0C4DH73 117 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 IGKV1D-12P01611 117 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 FAM71F2Q6NXP2 309 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 SLC25A48Q6ZT89 311 aaKnown RBP11.25□□□□□ -0.61
SIX4-201ENST00000216513 SMIM8Q96KF7 97 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 SSBP4Q9BWG4 385 aaPredicted RBP11.25□□□□□ -0.61
SIX4-201ENST00000216513 CD200R1LQ6Q8B3 271 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 FAM19A2Q8N3H0 131 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 MRPL32Q9BYC8 188 aaKnown RBP11.25□□□□□ -0.61
SIX4-201ENST00000216513 SHISA9B4DS77 424 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 RPLP1P05386 114 aaKnown RBP11.25□□□□□ -0.61
SIX4-201ENST00000216513 LCN12Q6JVE5 192 aa11.25□□□□□ -0.61
SIX4-201ENST00000216513 A0A1B0GV72 72 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 NBEAP1P0C6P0 100 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms