RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ADMP35318 185 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 ATP5L2Q7Z4Y8 100 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 SSBP4Q9BWG4 385 aaPredicted RBP11.23□□□□□ -0.61
SF3A1-201ENST00000215793 OVOL1O14753 267 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 YAE1D1Q9NRH1 226 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 CREBBPQ92793 2442 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 WNT2P09544 360 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 CD24P25063 80 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 TREML4Q6UXN2 200 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 COQ2Q96H96 371 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 FOXF2Q12947 444 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 BRCA1P38398 1863 aaKnown RBP11.23□□□□□ -0.61
SF3A1-201ENST00000215793 TRAV9-2A0A087WT02 112 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 PAX8Q06710 450 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 NUDT10Q8NFP7 164 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 NDUFAF3Q9BU61 184 aa11.23□□□□□ -0.61
SF3A1-201ENST00000215793 TRAV1-1A0A0B4J248 108 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 LYNX1G3V0Z9 82 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 DPM2O94777 84 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 LYNX1P0DP58 116 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 CD59P13987 128 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 TRGV11A0A075B6L2 103 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 TRBV24-1A0A075B6N3 115 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 RNF5Q99942 180 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 WFDC1Q9HC57 220 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 GREB1LQ9C091 1923 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-201ENST00000215793 OOSP1A8MZH6 123 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 LDLRAD4O15165 306 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BKO60814 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BJP06899 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BOP23527 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BBP33778 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 PCP4P48539 62 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BDP58876 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BCP62807 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST2H2BEQ16778 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BHQ93079 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BNQ99877 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 HIST1H2BMQ99879 126 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 GGTLC1Q9BX51 225 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 WNK2Q9Y3S1 2297 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 ARID2Q68CP9 1835 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 TFF1P04155 84 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 FBLN7Q53RD9 439 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 FAM169BQ8N8A8 192 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 OR5AN1Q8NGI8 311 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 GLMPQ8WWB7 406 aa11.22□□□□□ -0.61
SF3A1-201ENST00000215793 CHCHD1Q96BP2 118 aaKnown RBP11.22□□□□□ -0.61
SF3A1-201ENST00000215793 ZNF236Q9UL36 1845 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 PGPEP1LA6NFU8 196 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 TMEM42Q69YG0 159 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 PLXNA1Q9UIW2 1896 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 CD5P06127 495 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 FREM3P0C091 2139 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 LINC01559Q495D7 138 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 ZNF672Q499Z4 452 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-201ENST00000215793 SPACA3Q8IXA5 215 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 MESP1Q9BRJ9 268 aa11.21□□□□□ -0.61
SF3A1-201ENST00000215793 A0A1W2PRX2 142 aa11.21□□□□□ -0.62
SF3A1-201ENST00000215793 HTN3P15516 51 aa11.21□□□□□ -0.62
SF3A1-201ENST00000215793 FOXG1P55316 489 aaPredicted RBP11.21□□□□□ -0.62
SF3A1-201ENST00000215793 TAF1LQ8IZX4 1826 aa11.21□□□□□ -0.62
SF3A1-201ENST00000215793 PATJQ8NI35 1801 aa11.21□□□□□ -0.62
SF3A1-201ENST00000215793 PRB3Q04118 309 aaPredicted RBP11.21□□□□□ -0.62
SF3A1-201ENST00000215793 DMRTA1Q5VZB9 504 aa11.21□□□□□ -0.62
SF3A1-201ENST00000215793 DICER1Q9UPY3 1922 aaKnown RBP11.2□□□□□ -0.62
SF3A1-201ENST00000215793 DOCK4Q8N1I0 1966 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 A0A1B0GV72 72 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 RNF182Q8N6D2 247 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 NBASA2RRP1 2371 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 IGHV2-26A0A0B4J1V2 119 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 DSCR9P59020 149 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 SLC25A48Q6ZT89 311 aaKnown RBP11.2□□□□□ -0.62
SF3A1-201ENST00000215793 KIR3DL3Q8N743 410 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 CACNA1BQ00975 2339 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 SUPT4H1P63272 117 aaKnown RBP11.2□□□□□ -0.62
SF3A1-201ENST00000215793 OR10W1Q8NGF6 305 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 SEPSECSQ9HD40 501 aaKnown RBP11.2□□□□□ -0.62
SF3A1-201ENST00000215793 TRAV41A0A0B4J266 112 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 TYMSP04818 313 aa11.2□□□□□ -0.62
SF3A1-201ENST00000215793 PSPNO60542 156 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 PLNP26678 52 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 METRNQ9UJH8 293 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 CACNA1HO95180 2353 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 IGHV1-8P0DP01 117 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 MINOS1Q5TGZ0 78 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 MINOS1-NBL1R4GNA1 71 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 TRAV40A0A0B4J280 105 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 H3BUT2 72 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 EFNA4P52798 201 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 NMSQ5H8A3 153 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 MBNL3Q9NUK0 354 aaKnown RBP11.19□□□□□ -0.62
SF3A1-201ENST00000215793 CADP27708 2225 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 SCN8AQ9UQD0 1980 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 IGKV1-27A0A075B6S5 117 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 A0A1B0GW64 132 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 A0A1B0GWJ7 208 aa11.19□□□□□ -0.62
SF3A1-201ENST00000215793 ZNF585BQ52M93 769 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms