RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 TBR1Q16650 682 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 OR2D3Q8NGH3 330 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 OR1L8Q8NGR8 309 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 NDUFA4L2Q9NRX3 87 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 PCNX1Q96RV3 2341 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 MOSP00540 346 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 SELENOVP59797 346 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 PRB3Q04118 309 aaPredicted RBP11.34□□□□□ -0.59
USH1C-201ENST00000005226 DEFB109BQ30KR1 87 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 LINC00322Q6ZN03 302 aaPredicted RBP11.34□□□□□ -0.59
USH1C-201ENST00000005226 RITA1Q96K30 269 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 TNFRSF19Q9NS68 423 aa11.34□□□□□ -0.59
USH1C-201ENST00000005226 TACC2O95359 2948 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 FAM181BA6NEQ2 426 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 DLL1O00548 723 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 FAM27E3Q08E93 113 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 ZNF788Q6ZQV5 615 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 PNKDQ8N490 385 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 FAM222BQ8WU58 562 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 TPSG1Q9NRR2 321 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 GVINP1Q7Z2Y8 2422 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 IGKV1D-37A0A075B6S9 117 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 TRAV17A0A0B4J275 112 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 FCN3O75636 299 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 LINC00614P0C842 121 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 SFTPCP11686 197 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 TSPOP30536 169 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 ERHP84090 104 aaKnown RBP11.33□□□□□ -0.6
USH1C-201ENST00000005226 PLA2G2CQ5R387 149 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 LEMD1Q68G75 181 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 LINC00173Q6ZV60 143 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 OR5B3Q8NH48 314 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 FXYD5Q96DB9 178 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 ALKBH7Q9BT30 221 aaPredicted RBP11.33□□□□□ -0.6
USH1C-201ENST00000005226 BET1LQ9NYM9 111 aa11.33□□□□□ -0.6
USH1C-201ENST00000005226 IGLL1P15814 213 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 HCP5Q6MZN7 132 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 Q71RC1 249 aaPredicted RBP11.32□□□□□ -0.6
USH1C-201ENST00000005226 GRAMD2BQ96HH9 432 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 MCRIP2Q9BUT9 160 aaKnown RBP11.32□□□□□ -0.6
USH1C-201ENST00000005226 IGHV3-72A0A0B4J1Y9 119 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 H0YJW9 148 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 CCL25O15444 150 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 DLX1P56177 255 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 COX19Q49B96 90 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 LINC00305Q7Z4B0 112 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 URB1-AS1Q96HZ7 61 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 C19orf24Q9BVV8 132 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 GSX1Q9H4S2 264 aaPredicted RBP11.32□□□□□ -0.6
USH1C-201ENST00000005226 CACNA1HO95180 2353 aa11.32□□□□□ -0.6
USH1C-201ENST00000005226 PGPA6NDG6 321 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 SLC25A5P05141 298 aaKnown RBP11.31□□□□□ -0.6
USH1C-201ENST00000005226 ZNF137PP52743 207 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 RBMXL3Q8N7X1 1067 aaKnown RBP11.31□□□□□ -0.6
USH1C-201ENST00000005226 MRPL32Q9BYC8 188 aaKnown RBP11.31□□□□□ -0.6
USH1C-201ENST00000005226 IGLV3-9A0A075B6K5 115 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 TOX4O94842 621 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 OR1B1Q8NGR6 318 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 FLYWCH2Q96CP2 140 aaKnown RBP11.31□□□□□ -0.6
USH1C-201ENST00000005226 OR8B2Q96RD0 313 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 SAP30LQ9HAJ7 183 aa11.31□□□□□ -0.6
USH1C-201ENST00000005226 TPRP12270 2363 aaKnown RBP11.31□□□□□ -0.6
USH1C-201ENST00000005226 FSTL3O95633 263 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 H1FXQ92522 213 aaKnown RBP11.3□□□□□ -0.6
USH1C-201ENST00000005226 ASCL2Q99929 193 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 ZNF430Q9H8G1 570 aaPredicted RBP11.3□□□□□ -0.6
USH1C-201ENST00000005226 RAB9BQ9NP90 201 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 POLEQ07864 2286 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 SPAARA0A1B0GVQ0 90 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 APOA2P02652 100 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 ZNF138P52744 262 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 TIMM23BQ5SRD1 257 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 ZNF833PQ6ZTB9 187 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 DEFB123Q8N688 67 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 PGLYRP4Q96LB8 373 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 ZNF714Q96N38 554 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 TIMM8BQ9Y5J9 83 aaPredicted RBP11.3□□□□□ -0.6
USH1C-201ENST00000005226 FAM215AQ9Y5M1 114 aa11.3□□□□□ -0.6
USH1C-201ENST00000005226 TCRBV4S1A1TA0A5B7 111 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 hADV38S2A0JD32 116 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 C2orf70A6NJV1 201 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 C22orf46C9J442 243 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 SLC25A17O43808 307 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 PTTG1IPP53801 180 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 UBE2G1P62253 170 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 TMEM200BQ69YZ2 307 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 KLHDC1Q8N7A1 406 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 CACNG8Q8WXS5 425 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 MRPL27Q9P0M9 148 aaKnown RBP11.29□□□□□ -0.6
USH1C-201ENST00000005226 GATA4P43694 442 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 OR8B3Q8NGG8 313 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 OSR1Q8TAX0 266 aaPredicted RBP11.29□□□□□ -0.6
USH1C-201ENST00000005226 NCOR1P1Q9H4R4 102 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 C7orf69Q9H7B7 122 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 EPDR1Q9UM22 224 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 TRAV9-2A0A087WT02 112 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 C20orf202A1L168 122 aa11.29□□□□□ -0.6
USH1C-201ENST00000005226 ENSAO43768 121 aaKnown RBP11.29□□□□□ -0.6
USH1C-201ENST00000005226 RELQ04864 619 aaPredicted RBP11.29□□□□□ -0.6
USH1C-201ENST00000005226 LYPD2Q6UXB3 125 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms