RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NDEL1Q9GZM8 345 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 WDR61Q9GZS3 305 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 HDHD2Q9H0R4 259 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 MAP1LC3AQ9H492 121 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TREM1Q9NP99 234 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 IMP3Q9NV31 184 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TAS2R4Q9NYW5 299 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 CKLFQ9UBR5 152 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 EPDR1Q9UM22 224 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 HS3ST2Q9Y278 367 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 POLR1DQ9Y2S0 133 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 U3KQ87 197 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 HYDINQ4G0P3 5121 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 JMJD1CQ15652 2540 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 LAMA5O15230 3695 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 WNK2Q9Y3S1 2297 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 FREM3P0C091 2139 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 EML6Q6ZMW3 1958 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 PIEZO2Q9H5I5 2752 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 CHD2O14647 1828 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 FLGP20930 4061 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 PDZD2O15018 2839 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RFX7Q2KHR2 1363 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 MTUS2Q5JR59 1369 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 DOCK3Q8IZD9 2030 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SCN3AQ9NY46 2000 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ZNF106Q9H2Y7 1883 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 UBR4Q5T4S7 5183 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 VPS13DQ5THJ4 4388 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SRRM2Q9UQ35 2752 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CCDC160A6NGH7 325 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CXCR6O00574 342 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 YKT6O15498 198 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ZNF682O95780 498 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 IGLV3-1P01715 115 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 TYMSP04818 313 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 OR5G3P0C626 314 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 MGST1P10620 155 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RPL12P30050 165 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CDC34P49427 236 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ZNF137PP52743 207 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 NKX2-5P52952 324 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 UBE2G2P60604 165 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RPS20P60866 119 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RAB5BP61020 215 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 NAA20P61599 178 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 HBA1P69905 142 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 IFITM2Q01629 132 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CAV1Q03135 178 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 MLLT11Q13015 90 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 PMAIP1Q13794 54 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SPANXN5Q5MJ07 72 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SPANXN3Q5MJ09 141 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 C1orf195Q5TG92 126 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RPL22L1Q6P5R6 122 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 LINC00575Q6W349 94 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 HIST2H3AQ71DI3 136 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 MIR17HGQ75NE6 70 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 COMMD7Q86VX2 200 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 BPIFA4PQ86YQ2 179 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CRLF3Q8IUI8 442 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CLVS1Q8IUQ0 354 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CLECL1Q8IZS7 167 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CNPY4Q8N129 248 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SIGLECL1Q8N7X8 197 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 OR13D1Q8NGV5 346 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 H1FXQ92522 213 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ITFG2Q969R8 447 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 IMP4Q96G21 291 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 LINC00052Q96N35 136 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SCGB3A1Q96QR1 104 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 LYSMD1Q96S90 227 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 DHRS9Q9BPW9 319 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 TMEM147Q9BVK8 224 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ULBP3Q9BZM4 244 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 DCSTAMPQ9H295 470 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 OR51I2Q9H344 312 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 C11orf68Q9H3H3 251 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 XPNPEP1Q9NQW7 623 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 SPANXB1Q9NS25 103 aaPredicted RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 PLEKHJ1Q9NW61 149 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 CMTM6Q9NX76 183 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 FBXL12Q9NXK8 326 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 RASL12Q9NYN1 266 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 UBAP1Q9NZ09 502 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 TMEM14CQ9P0S9 112 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 JPT1Q9UK76 154 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 ZANQ9Y493 2812 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 FAT3Q8TDW7 4589 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 E9PCH4 1651 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 EPPK1P58107 5090 aaKnown RBP-0.18□□□□□ -2.44
VPS35-212ENST00000640313 FAM208BQ5VWN6 2430 aa-0.18□□□□□ -2.44
VPS35-212ENST00000640313 NF1P21359 2839 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 MUC17Q685J3 4493 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 PIK3R4Q99570 1358 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ANAPC1Q9H1A4 1944 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 ZNF292O60281 2723 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 CHD6Q8TD26 2715 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 BCL9O00512 1426 aa-0.19□□□□□ -2.44
VPS35-212ENST00000640313 RIC1Q4ADV7 1423 aa-0.19□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms