RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 AQP3Q92482 292 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 CREBBPQ92793 2442 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 A6NNC1 897 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-217ENST00000637988 K7ENP7 123 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV3-48P01763 117 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 LIMS1P48059 325 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 Q0VFX4 171 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 FUT5Q11128 374 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 ERCC8Q13216 396 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 FAM24BQ8N5W8 94 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 ZSWIM8A7E2V4 1837 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 C1QTNF9BB2RNN3 333 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 MSMBP08118 114 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 PLNP26678 52 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 SPRED2Q7Z698 418 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 FER1L6-AS1Q8NA97 138 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 NEUROG1Q92886 237 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF414Q96IQ9 312 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 VWA8A3KMH1 1905 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 TRGC2P03986 189 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 OR9G9P0C7N8 305 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM219Q86XT9 240 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 FABP5P3A8MUU1 101 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 RFPL3SP0C7P2 107 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 LHX2P50458 406 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 SEC11AP67812 179 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 ASPHD2Q6ICH7 369 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 LHFPL6Q9Y693 200 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 PRSS23O95084 383 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 SMIM8Q96KF7 97 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 TNFRSF12AQ9NP84 129 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 FAM216BQ8N7L0 139 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM52Q8NDY8 209 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 PKDREJQ9NTG1 2253 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 CTSBP07858 339 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 ERGP11308 486 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 MEF2BQ02080 365 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-217ENST00000637988 C4orf48Q5BLP8 95 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM91Q6ZNR0 172 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 IFI27L2Q9H2X8 130 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 NUP210Q8TEM1 1887 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-217ENST00000637988 LOC102724200A0A096LPH7 203 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-217ENST00000637988 CELA3AP09093 270 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 CSRP3P50461 194 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 PRR13Q9NZ81 148 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 PLCE1Q9P212 2302 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 USF3Q68DE3 2245 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 THAP8Q8NA92 274 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 MS4A6AQ9H2W1 248 aa5.14□□□□□ -1.59
SCN1A-217ENST00000637988 PEF1Q9UBV8 284 aaKnown RBP5.14□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1B0GUT8 65 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 LINC01619G3V211 115 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 H3BQ15 152 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 SMIM13P0DJ93 91 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 ATP6V0CP27449 155 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM144Q7Z5S9 345 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 ZAR1Q86SH2 424 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 AURKAIP1Q9NWT8 199 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-217ENST00000637988 UMODP07911 640 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 INSL4Q14641 139 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 OR52E5Q8NH55 327 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM126AQ9H061 195 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 A0A0G2JNJ9 132 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 F2Z2F3 143 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM256Q8N2U0 113 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 OVOL2Q9BRP0 275 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 Q9UFV3 132 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 PAM16Q9Y3D7 125 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TNCP24821 2201 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 CLPSP04118 112 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 C15orf32Q32M92 178 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 MUC21Q5SSG8 566 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 BHLHA9Q7RTU4 235 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1W2PP11 408 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 WISP1O95388 367 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 SRSF1Q07955 248 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-217ENST00000637988 RNF125Q96EQ8 232 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 OTORQ9NRC9 128 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 CYSLTR1Q9Y271 337 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 DSCAMO60469 2012 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1B0GUS0 222 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 K7ERU9 68 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 YPEL1O60688 119 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 CRYBB3P26998 211 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 ABLIM2Q6H8Q1 611 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 YPEL2Q96QA6 119 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 Q9H3A6 140 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 SPRR3Q9UBC9 169 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 ANAPC10Q9UM13 185 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 RLFQ13129 1914 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 H3BTX0 84 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TOMM40O96008 361 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 OR1P1Q8NH06 330 aa5.13□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM50AO95807 157 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 SRIP30626 198 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 FOXL1Q12952 345 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 C6orf226Q5I0X4 101 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 FAM90A2PQ658T7 463 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 ORMDL3Q8N138 153 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms