RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 STUMQ69YW2 141 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 OR4A47Q6IF82 309 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 LRP11Q86VZ4 500 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TPRX1Q8N7U7 411 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 OR4A5Q8NH83 315 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 OSR1Q8TAX0 266 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF596Q8TC21 504 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 KCNS1Q96KK3 526 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SPRY4Q9C004 299 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SAP30LQ9HAJ7 183 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 APC2O95996 2303 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 RRHO14718 337 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TCF21O43680 179 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SERF1AO75920 110 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 OR4A8P0C604 315 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A6P0DMU7 189 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A5P0DMU8 189 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A7P0DMV0 189 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ESDP10768 282 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 EGR1P18146 543 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 USF1P22415 310 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 GLRXP35754 106 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TNFAIP6P98066 277 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PRCDQ00LT1 54 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 POU2AF1Q16633 256 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 C3orf36Q3SXR2 165 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 C2orf83Q53S99 150 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A1Q5HYN5 189 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CT45A3Q8NHU0 189 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 VN1R17PQ8TDU5 208 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 STARD4Q96DR4 205 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 FAM103A1Q9BTL3 118 aaKnown RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 FZR1Q9UM11 496 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SOX21Q9Y651 276 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 IZUMO1RA6ND01 250 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 UPK2O00526 184 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SPRY3O43610 288 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PMCHP20382 165 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 RPL39P5Q59GN2 51 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 GCSAMLQ5JQS6 135 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PERPQ96FX8 193 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM208Q9BTX3 173 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 IFI27L2Q9H2X8 130 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF430Q9H8G1 570 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 POLR3KQ9Y2Y1 108 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SDK1Q7Z5N4 2213 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 GRIFINA4D1Z8 144 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SCGB2A1O75556 95 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 IGHV3-13P01766 116 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PPBPP02775 128 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 REG1AP05451 166 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A16P16260 332 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CRYBB3P26998 211 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF83P51522 516 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CX3CL1P78423 397 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TIMM23BQ5SRD1 257 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 C10orf113Q5VZT2 155 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TEX43Q6ZNM6 134 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 CD177Q8N6Q3 437 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 OR10X1Q8NGY0 326 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 GRAMD2BQ96HH9 432 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 DERL1Q9BUN8 251 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 DNAJC4Q9NNZ3 241 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM14BQ9NUH8 114 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 BET1LQ9NYM9 111 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PAM16Q9Y3D7 125 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 LSM4Q9Y4Z0 139 aaKnown RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 YTHDF2Q9Y5A9 579 aaKnown RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 PTPRQQ9UMZ3 2332 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SDK2Q58EX2 2172 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MED12Q93074 2177 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MYO9AB2RTY4 2548 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SAA2-SAA4A0A096LPE2 208 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CGAP01215 116 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 IGLV1-44P01699 117 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SNRPCP09234 159 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 IGFBP2P18065 325 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 TDGF1P3P51864 188 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MEF2CQ06413 473 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CR1LQ2VPA4 569 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PDPNQ86YL7 162 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 C11orf53Q8IXP5 236 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM256Q8N2U0 113 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 NEUROG1Q92886 237 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF714Q96N38 554 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PAXXQ9BUH6 204 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CSTL1Q9H114 145 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MRPL27Q9P0M9 148 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SVILO95425 2214 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 DOPEY1Q5JWR5 2465 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 IGHV1-18A0A0C4DH31 117 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 K7EQM0 130 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 M0QZ24 198 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SLC17A3O00476 420 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SAA2P0DJI9 122 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 NTF3P20783 257 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 NPPCP23582 126 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 S100A7P31151 101 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 RPL8P62917 257 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SPATA45Q537H7 98 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms