RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PRR20AP86496 221 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 LY6EQ16553 131 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 NPIPB3Q92617 1050 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 FAM210AQ96ND0 272 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 SCRT1Q9BWW7 348 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 SLC25A22Q9H936 323 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 CTXND1A0A1B0GTU2 59 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 MAP1LC3B2A6NCE7 125 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 A6NDX4 124 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 LINC00869P0C866 280 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 ZP3P21754 424 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 RND2P52198 227 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 FGF8P55075 233 aaPredicted RBP13.31□□□□□ -0.28
CLN3-252ENST00000636907 GUK1Q16774 197 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 TTC9CQ8N5M4 171 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 THAP8Q8NA92 274 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 FOXC2Q99958 501 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 ACTR3CQ9C0K3 210 aaPredicted RBP13.31□□□□□ -0.28
CLN3-252ENST00000636907 MAP1LC3BQ9GZQ8 125 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 TREM1Q9NP99 234 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 SLC39A9Q9NUM3 307 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 UNC79Q9P2D8 2635 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 ZANQ9Y493 2812 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 KRBOX1C9JBD0 128 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 I3L2K1 104 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 HMGB3O15347 200 aaKnown RBP13.3□□□□□ -0.28
CLN3-252ENST00000636907 CYB5BO43169 146 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 AMY1AP04745 511 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 CD5P06127 495 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 GATA2P23769 480 aaPredicted RBP13.3□□□□□ -0.28
CLN3-252ENST00000636907 DEFB112Q30KQ8 113 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 OR1L6Q8NGR2 347 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 C22orf15Q8WYQ4 148 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 NARS2Q96I59 477 aaKnown RBP13.3□□□□□ -0.28
CLN3-252ENST00000636907 ABCA1O95477 2261 aa13.3□□□□□ -0.28
CLN3-252ENST00000636907 ZFHX3Q15911 3703 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 IGKV1D-37A0A075B6S9 117 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 SEC14L6B5MCN3 397 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 SMAD7O15105 426 aaKnown RBP13.29□□□□□ -0.28
CLN3-252ENST00000636907 ATP6V0E1O15342 81 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 CDC34P49427 236 aaPredicted RBP13.29□□□□□ -0.28
CLN3-252ENST00000636907 CYP2G1PQ6ZSU1 146 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 SGMS2Q8NHU3 365 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 NANPQ8TBE9 248 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 RAB24Q969Q5 203 aa13.29□□□□□ -0.28
CLN3-252ENST00000636907 LINC01548A6NM66 108 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 TMEM116Q8NCL8 245 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 OR5T1Q8NG75 326 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 FANCD2OSQ96PS1 177 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 IGLV11-55A0A075B6I3 123 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 TCRBV4S1A1TA0A5B7 111 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 TMEM218A2RU14 115 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 ZFP92A6NM28 416 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 C9JQL5 133 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 K7EIM0 57 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 ZNF90Q03938 601 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 EIF5A2Q9GZV4 153 aaKnown RBP13.28□□□□□ -0.28
CLN3-252ENST00000636907 CREBBPQ92793 2442 aa13.28□□□□□ -0.28
CLN3-252ENST00000636907 ITPR3Q14573 2671 aa13.27□□□□□ -0.29
CLN3-252ENST00000636907 ECSCRQ19T08 205 aa13.27□□□□□ -0.29
CLN3-252ENST00000636907 RARRES2Q99969 163 aa13.27□□□□□ -0.29
CLN3-252ENST00000636907 PBDC1Q9BVG4 233 aa13.27□□□□□ -0.29
CLN3-252ENST00000636907 RBFOX3A6NFN3 312 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 TSPAN9O75954 239 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 PEA15Q15121 130 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 HAGHQ16775 308 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 UNQ5815/PRO19632Q6UWF5 114 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 C9orf139Q6ZV77 190 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 FAM110DQ8TAY7 271 aaPredicted RBP13.26□□□□□ -0.29
CLN3-252ENST00000636907 TMUB1Q9BVT8 246 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 TNFRSF19Q9NS68 423 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 PITPNC1Q9UKF7 332 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 ITPR2Q14571 2701 aa13.26□□□□□ -0.29
CLN3-252ENST00000636907 CSPG4Q6UVK1 2322 aa13.25□□□□□ -0.29
CLN3-252ENST00000636907 A0A1W2PPV4 95 aa13.25□□□□□ -0.29
CLN3-252ENST00000636907 TRGV9Q99603 122 aa13.25□□□□□ -0.29
CLN3-252ENST00000636907 TMPRSS5Q9H3S3 457 aa13.25□□□□□ -0.29
CLN3-252ENST00000636907 GSX1Q9H4S2 264 aaPredicted RBP13.25□□□□□ -0.29
CLN3-252ENST00000636907 SEPSECSQ9HD40 501 aaKnown RBP13.25□□□□□ -0.29
CLN3-252ENST00000636907 GNG13Q9P2W3 67 aa13.25□□□□□ -0.29
CLN3-252ENST00000636907 ZNF469Q96JG9 3925 aaPredicted RBP13.25□□□□□ -0.29
CLN3-252ENST00000636907 G3V318 75 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 IGHV4-59P01825 116 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 ADCYAP1P18509 176 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 C9orf152Q5JTZ5 239 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 SPATA31B1PQ5VZV4 182 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 OR4X1Q8NH49 305 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 M0QZK8 103 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 SFTA3P0C7M3 94 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 SELENOTP62341 195 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 RHOBP62745 196 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 ZNF506Q5JVG8 444 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 C16orf82Q7Z2V1 217 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 TMEM68Q96MH6 324 aa13.24□□□□□ -0.29
CLN3-252ENST00000636907 CCDC168Q8NDH2 2452 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 LOC102723971A0A1B0GUV8 181 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 PSMB11A5LHX3 300 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 OR2J3O76001 311 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 IGLC1P0CG04 106 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 STAG3L2P0CL84 134 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms