RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CDC34P49427 236 aaPredicted RBP8.36□□□□□ -1.07
CLN3-248ENST00000636355 ELLP55199 621 aaPredicted RBP8.36□□□□□ -1.07
CLN3-248ENST00000636355 SCGB2A2Q13296 93 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 AKIRIN2Q53H80 203 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 TOR2AQ5JU69 321 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 FAM120AOSQ5T036 256 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 STPG3Q8N7X2 389 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 WFDC11Q8NEX6 87 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 OR4X1Q8NH49 305 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 SLC39A9Q9NUM3 307 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 SLC45A2Q9UMX9 530 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 PDZD2O15018 2839 aa8.36□□□□□ -1.07
CLN3-248ENST00000636355 CSMD2Q7Z408 3487 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 IGLV11-55A0A075B6I3 123 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 IGHV3OR16-10A0A075B7F0 116 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 TCRBV4S1A1TA0A5B7 111 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 ANKRD34BA5PLL1 514 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MAP1LC3B2A6NCE7 125 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 H3BUA1 57 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 H3BUX3 64 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 I3L2K1 104 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 I3L521 148 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MT-CO2P00403 227 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 IGF1P05019 195 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 REG1AP05451 166 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 PAX6P26367 422 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 FCGR2BP31994 310 aaPredicted RBP8.35□□□□□ -1.07
CLN3-248ENST00000636355 FHITP49789 147 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 RND2P52198 227 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MFAP2P55001 183 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 RHOBP62745 196 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 RPP25LQ8N5L8 163 aaKnown RBP8.35□□□□□ -1.07
CLN3-248ENST00000636355 OR10G4Q8NGN3 311 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 OR10G9Q8NGN4 311 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 OR10G7Q8NGN6 311 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MISP3Q96FF7 219 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 ACY3Q96HD9 319 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 PFDN5Q99471 154 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MRPL32Q9BYC8 188 aaKnown RBP8.35□□□□□ -1.07
CLN3-248ENST00000636355 MAP1LC3BQ9GZQ8 125 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 GAR1Q9NY12 217 aaKnown RBP8.35□□□□□ -1.07
CLN3-248ENST00000636355 ARL2-SNX15V9GYD0 113 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 ZANQ9Y493 2812 aa8.35□□□□□ -1.07
CLN3-248ENST00000636355 MAP1AP78559 2803 aaPredicted RBP8.34□□□□□ -1.07
CLN3-248ENST00000636355 IGKV1OR2-108A0A075B7D4 117 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 TRAV30A0A087WSZ9 112 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 K7EIM0 57 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 ATP6V0E1O15342 81 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 YIF1AO95070 293 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 IGHG2P01859 326 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 CD5P06127 495 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 PSMB3P49720 205 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 ZNF726P1Q15940 193 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 KRTAP21-3Q3LHN1 58 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 C19orf54Q5BKX5 351 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 ASPHD1Q5U4P2 390 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 SPSB3Q6PJ21 355 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 CYP2G1PQ6ZSU1 146 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 TMEM86BQ8N661 226 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 OR1L4Q8NGR5 311 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 VN1R17PQ8TDU5 208 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 GATAD1Q8WUU5 269 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 SFT2D1Q8WV19 159 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 TMEM190Q8WZ59 177 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 TXN2Q99757 166 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 HSPB9Q9BQS6 159 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 WNT10AQ9GZT5 417 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 MANBALQ9NQG1 85 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 TMEM160Q9NX00 188 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 DMRT1Q9Y5R6 373 aa8.34□□□□□ -1.07
CLN3-248ENST00000636355 ELOA3CA0A087WX78 387 aaPredicted RBP8.33□□□□□ -1.08
CLN3-248ENST00000636355 A0A1W2PPV4 95 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 ZFP92A6NM28 416 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 CD5LO43866 347 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 AMY1AP04745 511 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 OR5G3P0C626 314 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 EGR2P11161 476 aaPredicted RBP8.33□□□□□ -1.08
CLN3-248ENST00000636355 HNF1AP20823 631 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 OR10J1P30954 320 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 IER3P46695 156 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 NPBWR1P48145 328 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 TAS2R45P59539 299 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 PLP1P60201 277 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 PEA15Q15121 130 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 MIC13Q5XKP0 118 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 S100A7AQ86SG5 101 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 RAB24Q969Q5 203 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 FANCD2OSQ96PS1 177 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 TXNDC17Q9BRA2 123 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 VSIRQ9H7M9 311 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 SLC25A22Q9H936 323 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 VPREB3Q9UKI3 123 aa8.33□□□□□ -1.08
CLN3-248ENST00000636355 IGKV1D-37A0A075B6S9 117 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 TRBV9A0A0B4J1U6 114 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 FAM223BA6NKX1 122 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 AP4M1O00189 453 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 CLN5O75503 358 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 CXorf1O96002 111 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 HSPB1P04792 205 aaKnown RBP8.32□□□□□ -1.08
CLN3-248ENST00000636355 LINC00869P0C866 280 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms