RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 LIPT2A6NK58 231 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 H3BQ85 93 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 H3BTX0 84 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 VENTXO95231 258 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 AMBPP02760 352 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 FAM90A13PP0C7W8 464 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 FAM90A24PP0C7X0 464 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 C1QTNF12Q5T7M4 302 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 PPP1R27Q86WC6 154 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 SPATA25Q9BR10 227 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 FNDC4Q9H6D8 234 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-212ENST00000636194 CHTOPQ9Y3Y2 248 aaKnown RBP5.13□□□□□ -1.59
SCN1A-212ENST00000636194 LIFP15018 202 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 MP68P56378 58 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM30AQ9NV96 361 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 IGKV6-21A0A0C4DH24 114 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 PEX11BO96011 259 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 APOC4P55056 127 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 CHCHD1Q96BP2 118 aaKnown RBP5.13□□□□□ -1.59
SCN1A-212ENST00000636194 DPM3Q9P2X0 92 aa5.13□□□□□ -1.59
SCN1A-212ENST00000636194 ADAMTS9Q9P2N4 1935 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 C15orf61A6NNL5 157 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 MOSP00540 346 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 SNRPCP09234 159 aaKnown RBP5.12□□□□□ -1.59
SCN1A-212ENST00000636194 RNF166Q96A37 237 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM222Q9H0R3 208 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 ALS2Q96Q42 1657 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 MYMXA0A1B0GTQ4 84 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 PRTN3P24158 256 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 RHOGP84095 191 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 BMPERQ8N8U9 685 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 FBXL7Q9UJT9 491 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 EXPH5Q8NEV8 1989 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 PRR19A6NJB7 356 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 FABP5P3A8MUU1 101 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 REG1AP05451 166 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 COX5BP10606 129 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 UCP1P25874 307 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 NOVP48745 357 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 ICAM4Q14773 271 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 MAJINQ3KP22 176 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 TANC1Q9C0D5 1861 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 TRPM3Q9HCF6 1732 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-212ENST00000636194 ACACBO00763 2458 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 RPS27P42677 84 aaKnown RBP5.12□□□□□ -1.59
SCN1A-212ENST00000636194 HAMPP81172 84 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM196Q5HYL7 178 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-212ENST00000636194 IGHG4P01861 327 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 PRR4Q16378 134 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 C1orf122Q6ZSJ8 110 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 CBLN2Q8IUK8 224 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 IGHV1OR21-1A0A087WYE8 117 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 COL9A1P20849 921 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 SPRED3Q2MJR0 410 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 TEX38Q6PEX7 206 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 SAXO1Q8IYX7 474 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 GDF15Q99988 308 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 GNB1LQ9BYB4 327 aa5.12□□□□□ -1.59
SCN1A-212ENST00000636194 FUSP35637 526 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TEX45Q8NA69 505 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 SPSB2Q99619 263 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 CXCL16Q9H2A7 254 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 JPT1Q9UK76 154 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 EMCNQ9ULC0 261 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 SNED1Q8TER0 1413 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 PROP1O75360 226 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 NBEAP1P0C6P0 100 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 DLK2Q6UY11 383 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 LINC00518Q8N0U6 118 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TMEM256Q8N2U0 113 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 PNKDQ8N490 385 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGKV1D-42A0A075B6H8 117 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TRAV14DV4A0A0A6YYC5 116 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 A0A0U1RQS6 177 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 PUSL1Q8N0Z8 303 aaKnown RBP5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGFBPL1Q8WX77 278 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 PCOLCEQ15113 449 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 STPG1Q5TH74 334 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGHV5-51A0A0C4DH38 117 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 OVOL1O14753 267 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 CCL1P22362 96 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 ZNF721Q8TF20 911 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TTTY12Q9BZ98 90 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGHV3-72A0A0B4J1Y9 119 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 SHISA8B8ZZ34 492 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 H3BUT2 72 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 SNAI2O43623 268 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGKV1D-33P01593 117 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGKV1-33P01594 117 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 FAM90A2PQ658T7 463 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 CYP2G1PQ6ZSU1 146 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 ZAR1Q86SH2 424 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 ST6GALNAC3Q8NDV1 305 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 LMO3Q8TAP4 145 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TLNRD1Q9H1K6 362 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGKV6D-21A0A0A0MT36 114 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 TRAV8-3A0A0A6YYJ7 113 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGHV3-66A0A0C4DH42 116 aa5.11□□□□□ -1.59
SCN1A-212ENST00000636194 IGKCP01834 107 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms