RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 LINC00469Q8N7U9 141 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TEX45Q8NA69 505 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 VSTM2AQ8TAG5 236 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TAF15Q92804 592 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLN3-242ENST00000635958 ANAPC16Q96DE5 110 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 PYGO2Q9BRQ0 406 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 SRD5A3Q9H8P0 318 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TGIF2-C20orf24A0A0A6YYL0 155 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 UPK2O00526 184 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 FAM106CPP0CH98 169 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 PSMB3P49720 205 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 PSG5Q15238 335 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TMEM241Q24JQ0 296 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TMEM14EPQ6UXP3 125 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 NPBQ8NG41 125 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 OR4A5Q8NH83 315 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 TMEM167AQ8TBQ9 72 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 PIFOQ8TCI5 191 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 SOX21Q9Y651 276 aaPredicted RBP11.3□□□□□ -0.6
CLN3-242ENST00000635958 MXRA5Q9NR99 2828 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 TRAV3A0A0B4J244 114 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 MAP1LC3B2A6NCE7 125 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 TRGC2P03986 189 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 FOSL1P15407 271 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 DEFA6Q01524 100 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 TMEM267Q0VDI3 215 aaPredicted RBP11.29□□□□□ -0.6
CLN3-242ENST00000635958 VMA21Q3ZAQ7 101 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 PYY3Q5JQD4 70 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 OR5R1Q8NH85 324 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 TMEM147Q9BVK8 224 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 TMUB1Q9BVT8 246 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 MAP1LC3BQ9GZQ8 125 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 RFNGQ9Y644 331 aa11.29□□□□□ -0.6
CLN3-242ENST00000635958 CTXND1A0A1B0GTU2 59 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 ZFP92A6NM28 416 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 KBTBD11O94819 623 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 NDUFA3O95167 84 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 TRGC1P0CF51 173 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 CD24P25063 80 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 SLC38A11Q08AI6 406 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 PDLIM3Q53GG5 364 aaPredicted RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 FAM120AOSQ5T036 256 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 ZNF343Q6P1L6 599 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 OR52E5Q8NH55 327 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 OR5B12Q96R08 314 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 SSX3Q99909 188 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 PRDM13Q9H4Q3 707 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 TMEM14BQ9NUH8 114 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 TMEM160Q9NX00 188 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 HSPB7Q9UBY9 170 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 SONP18583 2426 aaKnown RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 SMCO3A2RU48 225 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 C15orf61A6NNL5 157 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 CEBPZOSA8MTT3 80 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 SLC25A17O43808 307 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 METTL15P1P0C7V9 234 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 CNTFRP26992 372 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 PKIAP61925 76 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 MRGPRG-AS1Q2M3A8 158 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 FBLN7Q53RD9 439 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 COA6Q5JTJ3 125 aaKnown RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 LCN15Q6UWW0 184 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 BCL6BQ8N143 479 aaPredicted RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 OR10D4PQ8NGN7 298 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 OR4A16Q8NH70 328 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 RNASEH2CQ8TDP1 164 aaKnown RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 ACY3Q96HD9 319 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 OR4C12Q96R67 309 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 RSG1Q9BU20 258 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 ACTR3CQ9C0K3 210 aaPredicted RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 PRNDQ9UKY0 176 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 FOXA2Q9Y261 457 aaPredicted RBP11.28□□□□□ -0.6
CLN3-242ENST00000635958 SIGLEC9Q9Y336 463 aa11.28□□□□□ -0.6
CLN3-242ENST00000635958 IFITM10A6NMD0 228 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 C17orf112F2Z3M2 114 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 RRHO14718 337 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 MEF2BQ02080 365 aaPredicted RBP11.27□□□□□ -0.61
CLN3-242ENST00000635958 HES1Q14469 280 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 HNF4GQ14541 408 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 ZNF726P1Q15940 193 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 LBHQ53QV2 105 aaPredicted RBP11.27□□□□□ -0.61
CLN3-242ENST00000635958 TXNDC17Q9BRA2 123 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 YAE1D1Q9NRH1 226 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 FKBP11Q9NYL4 201 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 ZNF257Q9Y2Q1 563 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 URGCP-MRPS24S4R325 110 aa11.27□□□□□ -0.61
CLN3-242ENST00000635958 MTORP42345 2549 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 TSTD3H0UI37 97 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 NBR2O15453 112 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 TMEM11P17152 192 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 SRP14P37108 136 aaKnown RBP11.26□□□□□ -0.61
CLN3-242ENST00000635958 TNFRSF9Q07011 255 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 DEFB112Q30KQ8 113 aa11.26□□□□□ -0.61
CLN3-242ENST00000635958 H3BP45 60 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 PFN1P07737 140 aaKnown RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 IAPPP10997 89 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 FAM3BP58499 235 aaPredicted RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 SPCS3P61009 180 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 SSTP61278 116 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 HSPE1P61604 102 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms