RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 HLA-DMBP28068 263 aa17.25■□□□□ 0.35
CPSF1-214ENST00000622776 SUB1P53999 127 aaKnown RBP eCLIP17.25■□□□□ 0.352e-6■□□□□ 10.1
CPSF1-214ENST00000622776 MORN3Q6PF18 240 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-214ENST00000622776 GRAMD2BQ96HH9 432 aa17.25■□□□□ 0.35
CPSF1-214ENST00000622776 METTL26Q96S19 204 aa17.25■□□□□ 0.35
CPSF1-214ENST00000622776 FNDC4Q9H6D8 234 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-214ENST00000622776 MRPL36Q9P0J6 103 aaKnown RBP17.25■□□□□ 0.35
CPSF1-214ENST00000622776 KIAA1109Q2LD37 5005 aa17.25■□□□□ 0.35
CPSF1-214ENST00000622776 CLN5O75503 358 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 SPP1P10451 314 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 PGAM2P15259 253 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 PI3P19957 117 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 CRYBB3P26998 211 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 ETV6P41212 452 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 P2RY1P47900 373 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 AKR1C2P52895 323 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 PPP5CP53041 499 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 TP53RKQ96S44 253 aa17.24■□□□□ 0.35
CPSF1-214ENST00000622776 KNCNA6PVL3 124 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 ZNF705EA8MWA4 302 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-214ENST00000622776 ZNF688P0C7X2 276 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 C4BPBP20851 252 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 PIGPP57054 158 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 MLANAQ16655 118 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 OR4X1Q8NH49 305 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 ZNF486Q96H40 463 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-214ENST00000622776 PDCD10Q9BUL8 212 aa17.23■□□□□ 0.35
CPSF1-214ENST00000622776 ATG12O94817 140 aa17.22■□□□□ 0.35
CPSF1-214ENST00000622776 HOXA1P49639 335 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-214ENST00000622776 Q6ZTC4 211 aa17.22■□□□□ 0.35
CPSF1-214ENST00000622776 TMEM230Q96A57 120 aa17.22■□□□□ 0.35
CPSF1-214ENST00000622776 X6R8D5 127 aa17.22■□□□□ 0.35
CPSF1-214ENST00000622776 TRAV10A0A0B4J240 114 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 ELK1P19419 428 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 OPRK1P41145 380 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 RPL5P46777 297 aaKnown RBP17.21■□□□□ 0.35
CPSF1-214ENST00000622776 LHFPL1Q86WI0 220 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 DCANP1Q8TF63 244 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 NARS2Q96I59 477 aaKnown RBP17.21■□□□□ 0.35
CPSF1-214ENST00000622776 ENY2Q9NPA8 101 aa17.21■□□□□ 0.35
CPSF1-214ENST00000622776 IGHV4-4A0A075B6R2 117 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 ELOA3CA0A087WX78 387 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-214ENST00000622776 C3orf85A0A1B0GTC6 90 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 SCGB2A1O75556 95 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 IGKV1-17P01599 117 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 ACTL10Q5JWF8 245 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 CENPSQ8N2Z9 138 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 VCX3AQ9NNX9 186 aa17.2■□□□□ 0.34
CPSF1-214ENST00000622776 TRIM16LQ309B1 348 aa17.19■□□□□ 0.34
CPSF1-214ENST00000622776 TIGITQ495A1 244 aa17.19■□□□□ 0.34
CPSF1-214ENST00000622776 RNASE12Q5GAN4 147 aaKnown RBP17.19■□□□□ 0.34
CPSF1-214ENST00000622776 RNASE10Q5GAN6 216 aaKnown RBP17.19■□□□□ 0.34
CPSF1-214ENST00000622776 CSNK1G2-AS1Q8NCQ2 148 aa17.19■□□□□ 0.34
CPSF1-214ENST00000622776 CLEC5AQ9NY25 188 aa17.19■□□□□ 0.34
CPSF1-214ENST00000622776 TBC1D24Q9ULP9 559 aa17.19■□□□□ 0.34
CPSF1-214ENST00000622776 TRAV30A0A087WSZ9 112 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 A0A0G2JRQ6 117 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 HPGDSO60760 199 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 NCS1P62166 190 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 BSXQ3C1V8 233 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 SP6Q3SY56 376 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 ARRDC1Q8N5I2 433 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 RNF126Q9BV68 326 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 KLK11Q9UBX7 282 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 U3KQE9 123 aa17.18■□□□□ 0.34
CPSF1-214ENST00000622776 A0A087WXM4 84 aa17.17■□□□□ 0.34
CPSF1-214ENST00000622776 EIF2B2P49770 351 aaKnown RBP17.17■□□□□ 0.34
CPSF1-214ENST00000622776 DHRS2Q13268 280 aa17.17■□□□□ 0.34
CPSF1-214ENST00000622776 RRNAD1Q96FB5 475 aaKnown RBP17.17■□□□□ 0.34
CPSF1-214ENST00000622776 RAB40CQ96S21 281 aa17.17■□□□□ 0.34
CPSF1-214ENST00000622776 COPZ2Q9P299 210 aa17.17■□□□□ 0.34
CPSF1-214ENST00000622776 FAT2Q9NYQ8 4349 aa17.17■□□□□ 0.34
CPSF1-214ENST00000622776 PCLOQ9Y6V0 5065 aa17.16■□□□□ 0.34
CPSF1-214ENST00000622776 CD3DP04234 171 aa17.16■□□□□ 0.34
CPSF1-214ENST00000622776 UCP1P25874 307 aa17.16■□□□□ 0.34
CPSF1-214ENST00000622776 LINC00336Q6ZUF6 198 aa17.16■□□□□ 0.34
CPSF1-214ENST00000622776 RNASE11Q8TAA1 199 aaKnown RBP17.16■□□□□ 0.34
CPSF1-214ENST00000622776 HELTA6NFD8 242 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 VBP1P61758 197 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 PSMG4Q5JS54 123 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 Q6ZRM9 215 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 CCDC71LQ8N9Z2 235 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 ZFAND1Q8TCF1 268 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 CELA1Q9UNI1 258 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 DNAH17Q9UFH2 4485 aa17.15■□□□□ 0.34
CPSF1-214ENST00000622776 PKHD1P08F94 4074 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 DNAH2Q9P225 4427 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 RPS10-NUDT3A0A1W2PQS6 291 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 FAM25AB3EWG3 89 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 FAM25CB3EWG5 89 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 FAM25GB3EWG6 89 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 TBPP20226 339 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 SPCS3P61009 180 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 C16orf54Q6UWD8 224 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 OR52I2Q8NH67 350 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 GLMPQ8WWB7 406 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 FUNDC2Q9BWH2 189 aa17.14■□□□□ 0.33
CPSF1-214ENST00000622776 HNRNPCP07910 306 aaKnown RBP eCLIP17.13■□□□□ 0.33
CPSF1-214ENST00000622776 IGLC1P0CG04 106 aa17.13■□□□□ 0.33
CPSF1-214ENST00000622776 HTR2BP41595 481 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms