RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SLC45A2Q9UMX9 530 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 INSIG2Q9Y5U4 225 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 MYO18BQ8IUG5 2567 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 IGSF10Q6WRI0 2623 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 A0A0U1RQK1 487 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 A0A1W2PPI3 338 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 A0A1W2PPQ1 181 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 C22orf46C9J442 243 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 H7BYZ3 331 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 NDUFS8O00217 210 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BKO60814 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BJP06899 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BOP23527 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BBP33778 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 FAM3BP58499 235 aaPredicted RBP8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BDP58876 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 RHOBP62745 196 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BCP62807 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 CD69Q07108 199 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 PSG5Q15238 335 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 TNXAQ16473 311 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST2H2BEQ16778 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.55□□□□□ -1.04
CUX1-221ENST00000622516 LDLRAD2Q5SZI1 272 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 TMEM144Q7Z5S9 345 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 TMEM167AQ8TBQ9 72 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 NPIPB3Q92617 1050 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 FRZBQ92765 325 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BHQ93079 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BNQ99877 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HIST1H2BMQ99879 126 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 OR7C2O60412 319 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 AREGP15514 252 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 CDKN1AP38936 164 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 UQCRFS1P47985 274 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 MRGPRG-AS1Q2M3A8 158 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 PYY3Q5JQD4 70 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 LINC00311Q8N616 119 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 TMEM37Q8WXS4 190 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HILPDAQ9Y5L2 63 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 GALR1P47211 349 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 HLA-DRB5Q30154 266 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 PCGF1Q9BSM1 259 aa8.55□□□□□ -1.04
CUX1-221ENST00000622516 A0A087X0M5 115 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 A0A1B0GX30 115 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 BUB1B-PAK6H3BSN5 160 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 IGLV1-47P01700 117 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 S100A2P29034 98 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 RND2P52198 227 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 KLRD1Q13241 179 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 LINC01551Q86U37 167 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 ZNF596Q8TC21 504 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 IGHV1-3A0A0C4DH29 117 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 FCN1O00602 326 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 TRGC1P0CF51 173 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 DDTP30046 118 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 ASPHD1Q5U4P2 390 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 WDR73Q6P4I2 378 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 ZNF503Q96F45 646 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 CLEC7AQ9BXN2 247 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 FBXL15Q9H469 300 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 GSX1Q9H4S2 264 aaPredicted RBP8.54□□□□□ -1.04
CUX1-221ENST00000622516 KCNIP2Q9NS61 270 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 TMEM242Q9NWH2 141 aa8.54□□□□□ -1.04
CUX1-221ENST00000622516 DLL1O00548 723 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 PDE6DO43924 150 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 GOSR1O95249 250 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 MOSP00540 346 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 PFN1P07737 140 aaKnown RBP8.53□□□□□ -1.04
CUX1-221ENST00000622516 PRSS8Q16651 343 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 VMA21Q3ZAQ7 101 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 CDPF1Q6NVV7 123 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 C1QL4Q86Z23 238 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 VSTM2AQ8TAG5 236 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 RPEQ96AT9 228 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 RAB1BQ9H0U4 201 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 FUT9Q9Y231 359 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 USP9XQ93008 2570 aaPredicted RBP8.53□□□□□ -1.04
CUX1-221ENST00000622516 MC5RP33032 325 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 ZNF137PP52743 207 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 PRRX1P54821 245 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 MFAP2P55001 183 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 USF2Q15853 346 aaPredicted RBP8.53□□□□□ -1.04
CUX1-221ENST00000622516 OR8B3Q8NGG8 313 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 SLC35E1Q96K37 410 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 OR8B2Q96RD0 313 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 GOLT1BQ9Y3E0 138 aa8.53□□□□□ -1.04
CUX1-221ENST00000622516 IFITM10A6NMD0 228 aa8.52□□□□□ -1.04
CUX1-221ENST00000622516 FBLN7Q53RD9 439 aa8.52□□□□□ -1.04
CUX1-221ENST00000622516 OR5B12Q96R08 314 aa8.52□□□□□ -1.04
CUX1-221ENST00000622516 CTDSP1Q9GZU7 261 aa8.52□□□□□ -1.04
CUX1-221ENST00000622516 PRDM13Q9H4Q3 707 aa8.52□□□□□ -1.04
CUX1-221ENST00000622516 TSTD3H0UI37 97 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 IL3RAP26951 378 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 CRYBB3P26998 211 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 SLC25A33Q9BSK2 321 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 A0A1W2PN81 502 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 PYYP10082 97 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 PKIAP61925 76 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms