RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 STPG3Q8N7X2 389 aa8.39□□□□□ -1.07
CPNE3-210ENST00000621245 KIR2DL5BQ8NHK3 375 aa8.39□□□□□ -1.07
CPNE3-210ENST00000621245 SCPEP1Q9HB40 452 aa8.39□□□□□ -1.07
CPNE3-210ENST00000621245 PCLOQ9Y6V0 5065 aa8.39□□□□□ -1.07
CPNE3-210ENST00000621245 DEFB4AO15263 64 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 DEDDO75618 318 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 TNFAIP8O95379 198 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 CD3DP04234 171 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 RNASE2P10153 161 aaKnown RBP8.38□□□□□ -1.07
CPNE3-210ENST00000621245 RND3P61587 244 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 RELQ04864 619 aaPredicted RBP8.38□□□□□ -1.07
CPNE3-210ENST00000621245 MLANAQ16655 118 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 SP6Q3SY56 376 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 LEMD1Q68G75 181 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 FAAP20Q6NZ36 180 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 TCF24Q7RTU0 167 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 GALNT14Q96FL9 552 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 TSC22D3Q99576 134 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 MIXL1Q9H2W2 232 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 FNDC4Q9H6D8 234 aaPredicted RBP8.38□□□□□ -1.07
CPNE3-210ENST00000621245 FAM212BQ9NTI7 297 aaPredicted RBP8.38□□□□□ -1.07
CPNE3-210ENST00000621245 FKBP11Q9NYL4 201 aa8.38□□□□□ -1.07
CPNE3-210ENST00000621245 NUPR2A6NF83 97 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 UBE2CO00762 179 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 GNG7O60262 68 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 PGAM2P15259 253 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 PIGPP57054 158 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 NANOS2P60321 138 aaKnown RBP8.37□□□□□ -1.07
CPNE3-210ENST00000621245 CTF1Q16619 201 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 PVRIGQ6DKI7 326 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 Q6ZRM9 215 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 LHFPL5Q8TAF8 219 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 ABHD1Q96SE0 405 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 MS4A6AQ9H2W1 248 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 VSIRQ9H7M9 311 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 VCX3AQ9NNX9 186 aa8.37□□□□□ -1.07
CPNE3-210ENST00000621245 PUS1Q9Y606 427 aaKnown RBP eCLIP8.37□□□□□ -1.07
CPNE3-210ENST00000621245 TRAV14DV4A0A0A6YYC5 116 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 FAM25AB3EWG3 89 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 FAM25CB3EWG5 89 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 FAM25GB3EWG6 89 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 DFFBO76075 338 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 ETV6P41212 452 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 LPCAT3Q6P1A2 487 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 OR13C8Q8NGS7 320 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 PHLDA1Q8WV24 401 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-210ENST00000621245 CMTM3Q96MX0 182 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 TXN2Q99757 166 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 CSTL1Q9H114 145 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 EXTL2Q9UBQ6 330 aa8.36□□□□□ -1.07
CPNE3-210ENST00000621245 SMIM31A0A1B0GVY4 71 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 GABARAPO95166 117 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 TMEM50AO95807 157 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 CA1P00915 261 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-210ENST00000621245 GIG44P09565 113 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-210ENST00000621245 AKR1C2P52895 323 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 DEFB131AP59861 70 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 ERHP84090 104 aaKnown RBP8.35□□□□□ -1.07
CPNE3-210ENST00000621245 RNASE10Q5GAN6 216 aaKnown RBP8.35□□□□□ -1.07
CPNE3-210ENST00000621245 SLC35G3Q8N808 338 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 MARCH1Q8TCQ1 289 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 MTFP1Q9UDX5 166 aa8.35□□□□□ -1.07
CPNE3-210ENST00000621245 C3orf85A0A1B0GTC6 90 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 MPTX1A8MV57 137 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 INS-IGF2F8WCM5 200 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 IFNA17P01571 189 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 C4BPBP20851 252 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 S100GP29377 79 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 HOXA1P49639 335 aaPredicted RBP8.34□□□□□ -1.07
CPNE3-210ENST00000621245 RORCP51449 518 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 BSXQ3C1V8 233 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 TIGITQ495A1 244 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 ZNF600Q6ZNG1 722 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 OR11H2Q8NH07 326 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 TMEM170AQ8WVE7 144 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 FBXL17Q9UF56 701 aa8.34□□□□□ -1.07
CPNE3-210ENST00000621245 KNCNA6PVL3 124 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 NXPH3O95157 252 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 IGKV1-17P01599 117 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 CD74P04233 296 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 OR5AC1P0C628 307 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 UCP1P25874 307 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 MEF2DQ14814 521 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 SPCS2Q15005 226 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 TRIM16LQ309B1 348 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 SCGB2B2Q4G0G5 96 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 GPR107Q5VW38 600 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 ARRDC1Q8N5I2 433 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 DUSP18Q8NEJ0 188 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 ZNF486Q96H40 463 aaPredicted RBP8.33□□□□□ -1.08
CPNE3-210ENST00000621245 RARRES2Q99969 163 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 GINS3Q9BRX5 216 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 RTBDNQ9BSG5 229 aaPredicted RBP8.33□□□□□ -1.08
CPNE3-210ENST00000621245 HSPG2P98160 4391 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 DNAH5Q8TE73 4624 aa8.33□□□□□ -1.08
CPNE3-210ENST00000621245 LRP1BQ9NZR2 4599 aa8.32□□□□□ -1.08
CPNE3-210ENST00000621245 CTDSP2O14595 271 aa8.32□□□□□ -1.08
CPNE3-210ENST00000621245 ZNF688P0C7X2 276 aa8.32□□□□□ -1.08
CPNE3-210ENST00000621245 ZNF182P17025 639 aaPredicted RBP8.32□□□□□ -1.08
CPNE3-210ENST00000621245 SNCAP37840 140 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms