RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CLN5O75503 358 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 RCVRNP35243 200 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 P2RY1P47900 373 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 HOXA1P49639 335 aaPredicted RBP6.97□□□□□ -1.29
VRK3-224ENST00000601849 SNRPD3P62318 126 aaKnown RBP6.97□□□□□ -1.29
VRK3-224ENST00000601849 PRR20EP86478 221 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 PRR20CP86479 221 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 PRR20DP86480 221 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 PRR20BP86481 221 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 PRR20AP86496 221 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 ACTL10Q5JWF8 245 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 TRPT1Q86TN4 253 aaKnown RBP6.97□□□□□ -1.29
VRK3-224ENST00000601849 Q8NAQ8 132 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 NDUFAF3Q9BU61 184 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 RNF126Q9BV68 326 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 PFDN2Q9UHV9 154 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 DNAH2Q9P225 4427 aa6.96□□□□□ -1.29
VRK3-224ENST00000601849 DEFB131BA0A096LNP1 70 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 ZNF705EA8MWA4 302 aaPredicted RBP6.96□□□□□ -1.3
VRK3-224ENST00000601849 K7EQG2 157 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 B3GALNT1O75752 331 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 TNFAIP8O95379 198 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 IFNA21P01568 189 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 ZNF688P0C7X2 276 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 RBMY1A1P0DJD3 496 aaKnown RBP6.96□□□□□ -1.3
VRK3-224ENST00000601849 RBMY1CP0DJD4 496 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 CRYBB3P26998 211 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 RPS19P39019 145 aaKnown RBP6.96□□□□□ -1.3
VRK3-224ENST00000601849 HTR2BP41595 481 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 RPL5P46777 297 aaKnown RBP6.96□□□□□ -1.3
VRK3-224ENST00000601849 DHRS2Q13268 280 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 RBMY1FQ15415 496 aaKnown RBP6.96□□□□□ -1.3
VRK3-224ENST00000601849 TRIM16LQ309B1 348 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 Q6ZTC4 211 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 LILRB2Q8N423 598 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 CCDC71LQ8N9Z2 235 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 OR4X1Q8NH49 305 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 ZFAND1Q8TCF1 268 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 GPX8Q8TED1 209 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 ZFAND3Q9H8U3 227 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 COPZ2Q9P299 210 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 COMMD3Q9UBI1 195 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 CACFD1Q9UGQ2 172 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 DNAH6Q9C0G6 4158 aa6.96□□□□□ -1.3
VRK3-224ENST00000601849 RYR1P21817 5038 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 KIAA1109Q2LD37 5005 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 C3orf85A0A1B0GTC6 90 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 A0A1B0GU03 582 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 IFNA10P01566 189 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 IGKV1-39P01597 117 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 APOA1P02647 267 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 IGKV1D-39P04432 117 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 MED14OSP0DP75 135 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 ETV6P41212 452 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 PIGPP57054 158 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 RND3P61587 244 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 SPINK9Q5DT21 86 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 RNASE10Q5GAN6 216 aaKnown RBP6.95□□□□□ -1.3
VRK3-224ENST00000601849 SOHLH1Q5JUK2 328 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 NOXA1Q86UR1 476 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 SNX29P2Q8IUI4 249 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 RAB40CQ96S21 281 aa6.95□□□□□ -1.3
VRK3-224ENST00000601849 SEPSECSQ9HD40 501 aaKnown RBP6.95□□□□□ -1.3
VRK3-224ENST00000601849 A0A087WXM4 84 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 TMEM189A5PLL7 270 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 KNCNA6PVL3 124 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 GSTZ1O43708 216 aaPredicted RBP6.94□□□□□ -1.3
VRK3-224ENST00000601849 HNRNPCP07910 306 aaKnown RBP eCLIP6.94□□□□□ -1.3
VRK3-224ENST00000601849 SLC25A4P12235 298 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 SPCS3P61009 180 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 LSM3P62310 102 aaKnown RBP6.94□□□□□ -1.3
VRK3-224ENST00000601849 PSMG4Q5JS54 123 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 ETFRF1Q6IPR1 90 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 MZT2AQ6P582 158 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 FAM219AQ8IW50 185 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 FAM24BQ8N5W8 94 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 POM121L12Q8N7R1 296 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 OR1S2Q8NGQ3 325 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 C15orf40Q8WUR7 153 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 HEYLQ9NQ87 328 aaPredicted RBP6.94□□□□□ -1.3
VRK3-224ENST00000601849 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.94□□□□□ -1.3
VRK3-224ENST00000601849 CLEC5AQ9NY25 188 aa6.94□□□□□ -1.3
VRK3-224ENST00000601849 ELOA3CA0A087WX78 387 aaPredicted RBP6.93□□□□□ -1.3
VRK3-224ENST00000601849 A0A0B4J293 547 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 SMIM9A6NGZ8 99 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 AMBPP02760 352 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 SPART-AS1P0CW21 52 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 SMIM18P0DKX4 95 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 RNASE2P10153 161 aaKnown RBP6.93□□□□□ -1.3
VRK3-224ENST00000601849 TBPP20226 339 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 NUP62P37198 522 aaPredicted RBP6.93□□□□□ -1.3
VRK3-224ENST00000601849 PPP5CP53041 499 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 UBE2DNLQ8IWF7 75 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 ARRDC1Q8N5I2 433 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 DCANP1Q8TF63 244 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 X6R8D5 127 aa6.93□□□□□ -1.3
VRK3-224ENST00000601849 TEX48A0A1B0GUV7 120 aa6.92□□□□□ -1.3
VRK3-224ENST00000601849 PRSS29PA6NIE9 313 aa6.92□□□□□ -1.3
VRK3-224ENST00000601849 FAM25AB3EWG3 89 aa6.92□□□□□ -1.3
VRK3-224ENST00000601849 FAM25CB3EWG5 89 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms