RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 BSCL2Q96G97 398 aaPredicted RBP13.92□□□□□ -0.18
LIG1-216ENST00000598938 RCL1Q9Y2P8 373 aaKnown RBP13.92□□□□□ -0.18
LIG1-216ENST00000598938 NOTCH3Q9UM47 2321 aa13.92□□□□□ -0.18
LIG1-216ENST00000598938 OR2T8A6NH00 312 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 OVOL1O14753 267 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 TGOLN2O43493 480 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 SSSCA1O60232 199 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 IGHV3-48P01763 117 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 PRB2P02812 416 aaPredicted RBP13.91□□□□□ -0.18
LIG1-216ENST00000598938 OPRK1P41145 380 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 SMIM8Q96KF7 97 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 OR4C12Q96R67 309 aa13.91□□□□□ -0.18
LIG1-216ENST00000598938 GAR1Q9NY12 217 aaKnown RBP13.91□□□□□ -0.18
LIG1-216ENST00000598938 RPS10-NUDT3A0A1W2PQS6 291 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 OR2C1O95371 312 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 SIX6O95475 246 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 TMEM50AO95807 157 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 IGLL1P15814 213 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 PAX9P55771 341 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 RPP30P78346 268 aaKnown RBP13.9□□□□□ -0.18
LIG1-216ENST00000598938 MLANAQ16655 118 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 Q56UQ5 140 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 SPSB3Q6PJ21 355 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 UBAC2Q8NBM4 344 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 RAB40CQ96S21 281 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 MCRIP2Q9BUT9 160 aaKnown RBP13.9□□□□□ -0.18
LIG1-216ENST00000598938 ZC4H2Q9NQZ6 224 aa13.9□□□□□ -0.18
LIG1-216ENST00000598938 K7EPK0 472 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 IFNA4P05014 189 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 CTSGP08311 255 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 ADMP35318 185 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 NPBWR1P48145 328 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 SYNJ2BPP57105 145 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 TAS2R30P59541 319 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 RAB11AP62491 216 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 ACSM6Q6P461 480 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 GPHB5Q86YW7 130 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 CHRDL1Q9BU40 450 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 PSENENQ9NZ42 101 aa13.89□□□□□ -0.19
LIG1-216ENST00000598938 MRPL36Q9P0J6 103 aaKnown RBP13.89□□□□□ -0.19
LIG1-216ENST00000598938 H3BP45 60 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 SLC25A4P12235 298 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 H2BFSP57053 126 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 CD69Q07108 199 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 SPANXN5Q5MJ07 72 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 ETFRF1Q6IPR1 90 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 OR4X1Q8NH49 305 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 NMES1Q9C002 83 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 ZNF436Q9C0F3 470 aaPredicted RBP13.88□□□□□ -0.19
LIG1-216ENST00000598938 C11orf1Q9H5F2 150 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 MGAT4CQ9UBM8 478 aa13.88□□□□□ -0.19
LIG1-216ENST00000598938 STRAPQ9Y3F4 350 aaKnown RBP13.88□□□□□ -0.19
LIG1-216ENST00000598938 LSM5Q9Y4Y9 91 aaKnown RBP13.88□□□□□ -0.19
LIG1-216ENST00000598938 PRSS46E5RG02 174 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 LGALS9O00182 355 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 GNG7O60262 68 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 TSC22D2O75157 780 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 GPX4P36969 197 aaPredicted RBP13.87□□□□□ -0.19
LIG1-216ENST00000598938 RAB32Q13637 225 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 OXLD1Q5BKU9 147 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 PRSS54Q6PEW0 395 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 SLC16A13Q7RTY0 426 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 TMEM116Q8NCL8 245 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 OR9G4Q8NGQ1 327 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 ZNF414Q96IQ9 312 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 GPR61Q9BZJ8 451 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 AURKAIP1Q9NWT8 199 aaPredicted RBP13.87□□□□□ -0.19
LIG1-216ENST00000598938 COL7A1Q02388 2944 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 TENM3Q9P273 2699 aa13.87□□□□□ -0.19
LIG1-216ENST00000598938 RYR3Q15413 4870 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 SEC14L6B5MCN3 397 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 NUPL2O15504 423 aaKnown RBP13.86□□□□□ -0.19
LIG1-216ENST00000598938 CLN5O75503 358 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 CYCSP99999 105 aaKnown RBP13.86□□□□□ -0.19
LIG1-216ENST00000598938 FAM106AQ4KMX7 169 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 C9orf66Q5T8R8 295 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 TMEM14EPQ6UXP3 125 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 CACNG8Q8WXS5 425 aa13.86□□□□□ -0.19
LIG1-216ENST00000598938 PAIP2BQ9ULR5 123 aaKnown RBP13.86□□□□□ -0.19
LIG1-216ENST00000598938 RND2P52198 227 aa13.85□□□□□ -0.19
LIG1-216ENST00000598938 S100A10P60903 97 aa13.85□□□□□ -0.19
LIG1-216ENST00000598938 IL34Q6ZMJ4 242 aa13.85□□□□□ -0.19
LIG1-216ENST00000598938 WDR89Q96FK6 387 aaPredicted RBP13.85□□□□□ -0.19
LIG1-216ENST00000598938 ELOVL1Q9BW60 279 aa13.85□□□□□ -0.19
LIG1-216ENST00000598938 IGHV3-35A0A0C4DH35 117 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 PMS2P5A8MQ11 134 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 A8MWP6 167 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 L7N2F9 121 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 NDUFA4O00483 81 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 INSL3P51460 131 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 VAMP2P63027 116 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 RELQ04864 619 aaPredicted RBP13.84□□□□□ -0.19
LIG1-216ENST00000598938 UNQ9165/PRO28630Q6UXU0 137 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 NPIPB3Q92617 1050 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 MED28Q9H204 178 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 PEMTQ9UBM1 199 aa13.84□□□□□ -0.19
LIG1-216ENST00000598938 TRAV30A0A087WSZ9 112 aa13.83□□□□□ -0.2
LIG1-216ENST00000598938 SAP30O75446 220 aa13.83□□□□□ -0.2
LIG1-216ENST00000598938 DEDDO75618 318 aa13.83□□□□□ -0.2
LIG1-216ENST00000598938 CXCL3P19876 107 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms