RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	FAM208B	Q5VWN6	2430 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	LIPF	P07098	398 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	UBE2G2	P60604	165 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	PRB3	Q04118	309 aa	Predicted RBP	12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	OR8G2P	Q6IF36	304 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	FAM71F2	Q6NXP2	309 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	LINC01551	Q86U37	167 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318		Q8N7P7	452 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	OR10X1	Q8NGY0	326 aa		12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	WDR61	Q9GZS3	305 aa	Known RBP	12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	12.47	□□□□□ -0.41
DDX39A-209	ENST00000589318	IGHV2-26	A0A0B4J1V2	119 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	CCL25	O15444	150 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	IGLV1-47	P01700	117 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR5G3	P0C626	314 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318		Q0VG73	95 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	FAM78B	Q5VT40	261 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	CDC42EP3	Q9UKI2	254 aa		12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	CHTOP	Q9Y3Y2	248 aa	Known RBP	12.46	□□□□□ -0.42
DDX39A-209	ENST00000589318	FAM90A9P	A6NNJ1	464 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	PDE6D	O43924	150 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	IGKV1-16	P04430	117 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	IAPP	P10997	89 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	SUMO1	P63165	101 aa	Known RBP	12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR5AN1	Q8NGI8	311 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM186	Q96B77	213 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	ALKBH7	Q9BT30	221 aa	Predicted RBP	12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	BPESC1	Q9GZL8	116 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	VSIR	Q9H7M9	311 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	SLC35D1	Q9NTN3	355 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	ZNF586	Q9NXT0	402 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	LAMTOR2	Q9Y2Q5	125 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	LOC105371242	A0A075B767	164 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318		H0YJW9	148 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318		H3BP45	60 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	REG1A	P05451	166 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	REG1B	P48304	166 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	POU2AF1	Q16633	256 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4F5	Q8NH21	305 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR5B3	Q8NH48	314 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	TNFRSF14	Q92956	283 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4F4	Q96R69	305 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	CCL19	Q99731	98 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	NABP2	Q9BQ15	211 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	HSPB9	Q9BQS6	159 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	TXNDC17	Q9BRA2	123 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM140	Q9NV12	185 aa		12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	MRPS16	Q9Y3D3	137 aa	Known RBP	12.45	□□□□□ -0.42
DDX39A-209	ENST00000589318	VPS13C	Q709C8	3753 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	TRBV9	A0A0B4J1U6	114 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	TRAV3	A0A0B4J244	114 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	ZFP36	P26651	326 aa	Known RBP	12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	CTRL	P40313	264 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	RELB	Q01201	579 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	PRSS8	Q16651	343 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	HLA-DRB5	Q30154	266 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	TAF15	Q92804	592 aa	Known RBP eCLIP	12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	ONECUT1	Q9UBC0	465 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	COX11	Q9Y6N1	276 aa		12.44	□□□□□ -0.42
DDX39A-209	ENST00000589318	SRRM4	A7MD48	611 aa	Known RBP	12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	NDUFB8	O95169	186 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	CRISP2	P16562	243 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	HNRNPA3	P51991	378 aa	Known RBP	12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	ERVK-16	P61578	105 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	LMO4	P61968	165 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	RPL19	P84098	196 aa	Known RBP	12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM249	Q2WGJ8	235 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	VN1R17P	Q8TDU5	208 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	ZDHHC16	Q969W1	377 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	CLEC7A	Q9BXN2	247 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	QTRT1	Q9BXR0	403 aa	Known RBP	12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	BET1L	Q9NYM9	111 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	FBN2	P35556	2912 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	ADM	P35318	185 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	TFPI2	P48307	235 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	ARF6	P62330	175 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	PAX2	Q02962	417 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM267	Q0VDI3	215 aa	Predicted RBP	12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	RTL8B	Q17RB0	113 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4A47	Q6IF82	309 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	PNKD	Q8N490	385 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	PSENEN	Q9NZ42	101 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	SPG11	Q96JI7	2443 aa		12.43	□□□□□ -0.42
DDX39A-209	ENST00000589318	MED13L	Q71F56	2210 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	IGHV2-70D	A0A0C4DH43	119 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318		A1L4Q6	167 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318		M0R1W7	72 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	NUPR1	O60356	82 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	COX19	Q49B96	90 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	PDLIM3	Q53GG5	364 aa	Predicted RBP	12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	SIGLECL1	Q8N7X8	197 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4P4	Q8NGL7	312 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	SAMD10	Q9BYL1	202 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	TNC	P24821	2201 aa		12.42	□□□□□ -0.42
DDX39A-209	ENST00000589318	TRAV30	A0A087WSZ9	112 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	BUB1B-PAK6	H3BSN5	160 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	ARL16	Q0P5N6	197 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	MMD	Q15546	238 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	HAPLN4	Q86UW8	402 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	RPP25L	Q8N5L8	163 aa	Known RBP	12.41	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms