RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CRYGCP07315 174 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 CCL20P78556 96 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 SRSF3P84103 164 aaKnown RBP8.31□□□□□ -1.08
SS18-217ENST00000580958 GCSAMLQ5JQS6 135 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 UQCC3Q6UW78 93 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 LCN15Q6UWW0 184 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 BCL6BQ8N143 479 aaPredicted RBP8.31□□□□□ -1.08
SS18-217ENST00000580958 STPG3Q8N7X2 389 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 C5orf56Q8N8D9 126 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 BPIFCQ8NFQ6 507 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 OR10G4Q8NGN3 311 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 OR10G9Q8NGN4 311 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 OR10G7Q8NGN6 311 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 SFT2D1Q8WV19 159 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 MBD3L1Q8WWY6 194 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 NPIPB3Q92617 1050 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 LINC00052Q96N35 136 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 TMEM231Q9H6L2 316 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 SLC25A22Q9H936 323 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 TREM1Q9NP99 234 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 SLC45A2Q9UMX9 530 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 ZNF469Q96JG9 3925 aaPredicted RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 TEX15Q9BXT5 2789 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 FLNAP21333 2647 aaKnown RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 CTXND1A0A1B0GTU2 59 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 MAP1LC3B2A6NCE7 125 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 BTBD17A6NE02 478 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 NPIPB5A8MRT5 1133 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 SMAD7O15105 426 aaKnown RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 SOX15O60248 233 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 MT-CO2P00403 227 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 LINC00869P0C866 280 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 EGR2P11161 476 aaPredicted RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 DEFA4P12838 97 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 M6PRP20645 277 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 RPL29P47914 159 aaKnown RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 RND2P52198 227 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 FGF8P55075 233 aaPredicted RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 B2MP61769 119 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 GUK1Q16774 197 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 DEFB112Q30KQ8 113 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 ETFRF1Q6IPR1 90 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 CIARTQ8N365 385 aaPredicted RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 RPP25LQ8N5L8 163 aaKnown RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 THAP8Q8NA92 274 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 LFNGQ8NES3 379 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 FOXC2Q99958 501 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 ACTR3CQ9C0K3 210 aaPredicted RBP8.3□□□□□ -1.08
SS18-217ENST00000580958 MAP1LC3BQ9GZQ8 125 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 SLC39A9Q9NUM3 307 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 CSMD1Q96PZ7 3565 aa8.3□□□□□ -1.08
SS18-217ENST00000580958 ANK3Q12955 4377 aaKnown RBP8.29□□□□□ -1.08
SS18-217ENST00000580958 HECTD1Q9ULT8 2610 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 IGKV1D-37A0A075B6S9 117 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 TRAV1-1A0A0B4J248 108 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 I3L2K1 104 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 ATP6V0E1O15342 81 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 HMGB3O15347 200 aaKnown RBP8.29□□□□□ -1.08
SS18-217ENST00000580958 CYB5BO43169 146 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 ZP3P21754 424 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 GATA2P23769 480 aaPredicted RBP8.29□□□□□ -1.08
SS18-217ENST00000580958 CDC34P49427 236 aaPredicted RBP8.29□□□□□ -1.08
SS18-217ENST00000580958 BPIFB3P59826 476 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 ECSCRQ19T08 205 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 CYP2G1PQ6ZSU1 146 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 TTC9CQ8N5M4 171 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 OR5T1Q8NG75 326 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 OR1L6Q8NGR2 347 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 NANPQ8TBE9 248 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 C22orf15Q8WYQ4 148 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 NARS2Q96I59 477 aaKnown RBP8.29□□□□□ -1.08
SS18-217ENST00000580958 FAM210AQ96ND0 272 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 SCRT1Q9BWW7 348 aa8.29□□□□□ -1.08
SS18-217ENST00000580958 TCRBV4S1A1TA0A5B7 111 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 LINC01548A6NM66 108 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 SEC14L6B5MCN3 397 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 KRBOX1C9JBD0 128 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 TSPAN9O75954 239 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 AMY1AP04745 511 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 C9orf152Q5JTZ5 239 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 UNQ5815/PRO19632Q6UWF5 114 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 SGMS2Q8NHU3 365 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 RAB24Q969Q5 203 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 CELSR1Q9NYQ6 3014 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 TLN2Q9Y4G6 2542 aa8.28□□□□□ -1.08
SS18-217ENST00000580958 IGLV11-55A0A075B6I3 123 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 ZFP92A6NM28 416 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 C9JQL5 133 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 K7EIM0 57 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 CD5P06127 495 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 PEA15Q15121 130 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 HAGHQ16775 308 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 SPATA31B1PQ5VZV4 182 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 FAM110DQ8TAY7 271 aaPredicted RBP8.27□□□□□ -1.09
SS18-217ENST00000580958 FANCD2OSQ96PS1 177 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 RARRES2Q99969 163 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 PBDC1Q9BVG4 233 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 EIF5A2Q9GZV4 153 aaKnown RBP8.27□□□□□ -1.09
SS18-217ENST00000580958 TMPRSS5Q9H3S3 457 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 GSX1Q9H4S2 264 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms