RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 HBG1P69891 147 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 HBG2P69892 147 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 PSG5Q15238 335 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 FADS6Q8N9I5 356 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 TAF15Q92804 592 aaKnown RBP eCLIP8.97□□□□□ -0.97
CLK3-226ENST00000569406 PIGLQ9Y2B2 252 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 OR2W1Q9Y3N9 320 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 LHFPL6Q9Y693 200 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 SCO2A0A1W2PP80 73 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 TNFRSF6BO95407 300 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 PMS2CLQ68D20 193 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 GCSAMQ8N6F7 178 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 OR1L8Q8NGR8 309 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 ZNHIT1O43257 154 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 AMY1AP04745 511 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 CT45A6P0DMU7 189 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 CT45A5P0DMU8 189 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 CT45A7P0DMV0 189 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 ID3Q02535 119 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 PCOLCEQ15113 449 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 CT45A1Q5HYN5 189 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 CT45A3Q8NHU0 189 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 MAP1LC3CQ9BXW4 147 aa8.96□□□□□ -0.97
CLK3-226ENST00000569406 LSM4Q9Y4Z0 139 aaKnown RBP8.96□□□□□ -0.97
CLK3-226ENST00000569406 BOD1L1Q8NFC6 3051 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 BDP1A6H8Y1 2624 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 CSN1S1P47710 185 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 RNPS1Q15287 305 aaKnown RBP8.96□□□□□ -0.98
CLK3-226ENST00000569406 KISS1Q15726 138 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 C1orf147Q96MC9 270 aaPredicted RBP8.96□□□□□ -0.98
CLK3-226ENST00000569406 PSENENQ9NZ42 101 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 ZNF318Q5VUA4 2279 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 LRRC30A6NM36 301 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 NDUFV3P56181 108 aaKnown RBP8.96□□□□□ -0.98
CLK3-226ENST00000569406 FOXI1Q12951 378 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 ZDHHC23Q8IYP9 409 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 TMEM178AQ8NBL3 297 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 MAFAQ8NHW3 353 aaPredicted RBP8.96□□□□□ -0.98
CLK3-226ENST00000569406 BORCS8Q96FH0 119 aa8.96□□□□□ -0.98
CLK3-226ENST00000569406 FNDC10F2Z333 226 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 TAS2R45P59539 299 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 CX3CL1P78423 397 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 GAGE2BQ13066 116 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 GAGE2EQ4V326 116 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 PIGCQ92535 297 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 SAP30LQ9HAJ7 183 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 GAGE2DQ9UEU5 116 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 SIT1Q9Y3P8 196 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 SOX21Q9Y651 276 aaPredicted RBP8.95□□□□□ -0.98
CLK3-226ENST00000569406 ATP23Q9Y6H3 246 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 K7EN84 100 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 IGHV3-9P01782 118 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 RPS16P62249 146 aaKnown RBP8.95□□□□□ -0.98
CLK3-226ENST00000569406 PEAR1Q5VY43 1037 aaPredicted RBP8.95□□□□□ -0.98
CLK3-226ENST00000569406 LYSMD4Q5XG99 296 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 IL1F10Q8WWZ1 152 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 TMEM222Q9H0R3 208 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 PTPRZ1P23471 2315 aaPredicted RBP8.95□□□□□ -0.98
CLK3-226ENST00000569406 BSNQ9UPA5 3926 aa8.95□□□□□ -0.98
CLK3-226ENST00000569406 CD300LBA8K4G0 201 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 K7EMI3 77 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 RSPO1Q2MKA7 263 aaPredicted RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 MBNL2Q5VZF2 373 aaKnown RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 TBC1D26Q86UD7 250 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 SPACA3Q8IXA5 215 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 ZADH2Q8N4Q0 377 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 Q8TCH9 128 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 IMMP1LQ96LU5 166 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 C18orf15Q96N68 181 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 DEFB126Q9BYW3 111 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 RNASE7Q9H1E1 156 aaKnown RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 DSPP15924 2871 aaKnown RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 IGHV3-64DA0A0J9YX35 117 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 PATE3B3GLJ2 98 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 NTN3O00634 580 aaPredicted RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 OR9G9P0C7N8 305 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 COX5AP20674 150 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 FHL3Q13643 280 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 RTL8BQ17RB0 113 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 C1QL2Q7Z5L3 287 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 RAB9BQ9NP90 201 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 ALKBH4Q9NXW9 302 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 POLDIP2Q9Y2S7 368 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 PRRC2CQ9Y520 2896 aaKnown RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 CLDN14O95500 239 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 PATE4P0C8F1 98 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 CAMPP49913 170 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 FAM169BQ8N8A8 192 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 OXGR1Q96P68 337 aa8.94□□□□□ -0.98
CLK3-226ENST00000569406 CDX2Q99626 313 aaPredicted RBP8.94□□□□□ -0.98
CLK3-226ENST00000569406 F5H768 121 aa8.93□□□□□ -0.98
CLK3-226ENST00000569406 RPL7P18124 248 aaKnown RBP8.93□□□□□ -0.98
CLK3-226ENST00000569406 REG1BP48304 166 aa8.93□□□□□ -0.98
CLK3-226ENST00000569406 FOXA3P55318 350 aaPredicted RBP8.93□□□□□ -0.98
CLK3-226ENST00000569406 MAP1LC3AQ9H492 121 aa8.93□□□□□ -0.98
CLK3-226ENST00000569406 NHP2Q9NX24 153 aaKnown RBP8.93□□□□□ -0.98
CLK3-226ENST00000569406 C19orf25Q9UFG5 118 aaPredicted RBP8.93□□□□□ -0.98
CLK3-226ENST00000569406 TECTAO75443 2155 aa8.93□□□□□ -0.98
CLK3-226ENST00000569406 POLEQ07864 2286 aa8.93□□□□□ -0.98
CLK3-226ENST00000569406 IGHV1-45A0A0A0MS14 117 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms