RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LINC00854A0A1B0GVQ3 168 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 C15orf62A8K5M9 175 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 CEBPZOSA8MTT3 80 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 GNG7O60262 68 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 TMEM50AO95807 157 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 RELQ04864 619 aaPredicted RBP11.27□□□□□ -0.61
VPS39-210ENST00000568357 ANKRD55Q3KP44 614 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 DEFB125Q8N687 156 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 TMEM170AQ8WVE7 144 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 WFDC10AQ9H1F0 79 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 TUBA4BQ9H853 241 aa11.27□□□□□ -0.61
VPS39-210ENST00000568357 TRAV25A0A0B4J276 109 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 CORTO00230 105 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 YIF1AO95070 293 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 VAMP1P23763 118 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 HTR2BP41595 481 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 NPBWR1P48145 328 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 SRPXP78539 464 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 PPP1R1AQ13522 171 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 SMCO1Q147U7 214 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 HAGHQ16775 308 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 C2orf83Q53S99 150 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 TRIQKQ629K1 86 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 LINC00322Q6ZN03 302 aaPredicted RBP11.26□□□□□ -0.61
VPS39-210ENST00000568357 RBPMS2Q6ZRY4 209 aaKnown RBP11.26□□□□□ -0.61
VPS39-210ENST00000568357 OR10C1Q96KK4 312 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 TM2D3Q9BRN9 247 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 SMPXQ9UHP9 88 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 DNAH7Q8WXX0 4024 aa11.26□□□□□ -0.61
VPS39-210ENST00000568357 OR11H12B2RN74 326 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 C3orf84H3BNL1 204 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 SFT2D2O95562 160 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 OPRK1P41145 380 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 INPP1P49441 399 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 TNFRSF9Q07011 255 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 RBMS2Q15434 407 aaKnown RBP11.25□□□□□ -0.61
VPS39-210ENST00000568357 TOMM20LQ6UXN7 152 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 CENPSQ8N2Z9 138 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 LRTM2Q8N967 370 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 RCHY1Q96PM5 261 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 HSPB7Q9UBY9 170 aa11.25□□□□□ -0.61
VPS39-210ENST00000568357 HYDINQ4G0P3 5121 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 IGHV3-49A0A0A0MS15 119 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 IGHV7-4-1A0A0J9YVY3 117 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 A0A1B0GU03 582 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 RBMY1BA6NDE4 496 aaKnown RBP11.24□□□□□ -0.61
VPS39-210ENST00000568357 RBMY1EA6NEQ0 496 aaKnown RBP11.24□□□□□ -0.61
VPS39-210ENST00000568357 NAP1L6A6NFF2 107 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 PITX3O75364 302 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 CLN5O75503 358 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 NDUFB6O95139 128 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 RBMY1DP0C7P1 496 aaKnown RBP11.24□□□□□ -0.61
VPS39-210ENST00000568357 IL7P13232 177 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 BTCP35070 178 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 SLC16A13Q7RTY0 426 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 TMEM116Q8NCL8 245 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 SLC24A4Q8NFF2 622 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 OR52B4Q8NGK2 314 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 OR4X1Q8NH49 305 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 RHPN1-AS1Q9BWJ2 59 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 HIPK2Q9H2X6 1198 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 RBKSQ9H477 322 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 CACFD1Q9UGQ2 172 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 FLVCR2Q9UPI3 526 aa11.24□□□□□ -0.61
VPS39-210ENST00000568357 IGHV3OR16-13A0A075B7E8 117 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 TRAV14DV4A0A0A6YYC5 116 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 IGHV3-74A0A0B4J1X5 117 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 DUXBA0A1W2PPF3 345 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 CHEK1O14757 476 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 TSPAN4O14817 238 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 PRSS54Q6PEW0 395 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 OR1S1Q8NH92 325 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 RNF2Q99496 336 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 ZMAT4Q9H898 229 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 SRD5A3Q9H8P0 318 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 ZFAND3Q9H8U3 227 aa11.23□□□□□ -0.61
VPS39-210ENST00000568357 PUS1Q9Y606 427 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS39-210ENST00000568357 PLA2G10O15496 165 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 IGKV1-17P01599 117 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 APOHP02749 345 aaPredicted RBP11.22□□□□□ -0.61
VPS39-210ENST00000568357 LAMTOR1Q6IAA8 161 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 ZNF600Q6ZNG1 722 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 LILRB2Q8N423 598 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 RNASEH2CQ8TDP1 164 aaKnown RBP11.22□□□□□ -0.61
VPS39-210ENST00000568357 DTD1Q8TEA8 209 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 SPAG8Q99932 426 aaPredicted RBP11.22□□□□□ -0.61
VPS39-210ENST00000568357 U3KQ87 197 aa11.22□□□□□ -0.61
VPS39-210ENST00000568357 PIGBOS1A0A0B4J2F0 54 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 RPS10-NUDT3A0A1W2PQS6 291 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 C9orf170A2RU37 121 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 IFNA10P01566 189 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 HOXB5P09067 269 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 NPY1RP25929 384 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 TIGITQ495A1 244 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 CASC10Q5T4H9 136 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 CITED4Q96RK1 184 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 TMED3Q9Y3Q3 217 aa11.21□□□□□ -0.61
VPS39-210ENST00000568357 A6NHS1 94 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 CENPXA8MT69 81 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 SLC25A6P12236 298 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms