RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C1orf229Q6ZS94 237 aaPredicted RBP10.81□□□□□ -0.68
VPS4A-204ENST00000566354 GCSAMQ8N6F7 178 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 ZNRF1Q8ND25 227 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 NEUROG1Q92886 237 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 ANKHD1Q8IWZ3 2542 aaKnown RBP10.81□□□□□ -0.68
VPS4A-204ENST00000566354 CRYGCP07315 174 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 OR10J4P0C629 311 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 CHRNB4P30926 498 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 LINC00310P59036 64 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 TOMM20LQ6UXN7 152 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 TEX43Q6ZNM6 134 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 BAGE3Q86Y29 109 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 BAGE2Q86Y30 109 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 FAM169BQ8N8A8 192 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 ADTRPQ96IZ2 230 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 GNB1LQ9BYB4 327 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 TMEM167BQ9NRX6 74 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 SLC45A2Q9UMX9 530 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 V9GYV3 84 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 IGHV3OR15-7A0A075B7D8 119 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 A0A1B0GV72 72 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 HELTA6NFD8 242 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 PRB1P04280 392 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 LINC00869P0C866 280 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 IGFBP2P18065 325 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 IER3P46695 156 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 CT45A1Q5HYN5 189 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 TPTE2P1Q5T6R2 138 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 OR5AU1Q8NGC0 362 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 CT45A3Q8NHU0 189 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 FLNCQ14315 2725 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 A6NNC1 897 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 K7ERU9 68 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 GRNP28799 593 aaKnown RBP10.8□□□□□ -0.68
VPS4A-204ENST00000566354 GNG4P50150 75 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 POU2AF1Q16633 256 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 HSPB9Q9BQS6 159 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 IDI2-AS1Q9NZ38 188 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 ZNF462Q96JM2 2506 aa10.8□□□□□ -0.68
VPS4A-204ENST00000566354 SAA2-SAA4A0A096LPE2 208 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 SNURFLB1AK76 121 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 C22orf46C9J442 243 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 CCL25O15444 150 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 MT-ND6P03923 174 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 THBDP07204 575 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 SAA2P0DJI9 122 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-204ENST00000566354 CD33P20138 364 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 PSG5Q15238 335 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 C17orf58Q2M2W7 97 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 COX19Q49B96 90 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 MIR17HGQ75NE6 70 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 WFDC8Q8IUA0 241 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 MIEN1Q9BRT3 115 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 CLEC5AQ9NY25 188 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 PRNDQ9UKY0 176 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 OR51B2Q9Y5P1 312 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 KBTBD11-OT1A0A1B0GTJ5 212 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 LHBP01229 141 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 ATP5IP56385 69 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-204ENST00000566354 TMEM183BQ1AE95 376 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 RNF151Q2KHN1 245 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 ZNF705AQ6ZN79 300 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-204ENST00000566354 LEAP2Q969E1 77 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 OR2V2Q96R30 315 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 NABP2Q9BQ15 211 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 C19orf24Q9BVV8 132 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 SAMD10Q9BYL1 202 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 TECRQ9NZ01 308 aaKnown RBP10.79□□□□□ -0.68
VPS4A-204ENST00000566354 ZNF257Q9Y2Q1 563 aa10.79□□□□□ -0.68
VPS4A-204ENST00000566354 ACTL6BO94805 426 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 MC5RP33032 325 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 CX3CL1P78423 397 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 CENPWQ5EE01 88 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 PQLC2Q6ZP29 291 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 MOGAT3Q86VF5 341 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 LRP11Q86VZ4 500 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 OR8I2Q8N0Y5 310 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 SLC35E1Q96K37 410 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 OSTCQ9NRP0 149 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 MYO18BQ8IUG5 2567 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 J3QR06 171 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 CRYBB3P26998 211 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 RTL8BQ17RB0 113 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 TIGITQ495A1 244 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 UTF1Q5T230 341 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 LYG1Q8N1E2 194 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 PNKDQ8N490 385 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 HINT2Q9BX68 163 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 PLEKHA3Q9HB20 300 aa10.78□□□□□ -0.68
VPS4A-204ENST00000566354 CD40P25942 277 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 PRCDQ00LT1 54 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 MSMPQ1L6U9 139 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 SIGLECL1Q8N7X8 197 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF479Q96JC4 524 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 NAT8BQ9UHF3 227 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 COL12A1Q99715 3063 aa10.77□□□□□ -0.69
VPS4A-204ENST00000566354 TRAV30A0A087WSZ9 112 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 IGHV2-70DA0A0C4DH43 119 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 FRMD6-AS1P0C7T7 363 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 TAS2R45P59539 299 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms