RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 A0A1B0GU03 582 aa11□□□□□ -0.65
CLN3-213ENST00000565047 SNCAP37840 140 aa11□□□□□ -0.65
CLN3-213ENST00000565047 NPBWR1P48145 328 aa11□□□□□ -0.65
CLN3-213ENST00000565047 SPCS3P61009 180 aa11□□□□□ -0.65
CLN3-213ENST00000565047 DHODHQ02127 395 aa11□□□□□ -0.65
CLN3-213ENST00000565047 TMEM187Q14656 261 aa11□□□□□ -0.65
CLN3-213ENST00000565047 WFDC3Q8IUB2 231 aa11□□□□□ -0.65
CLN3-213ENST00000565047 DUSP18Q8NEJ0 188 aa11□□□□□ -0.65
CLN3-213ENST00000565047 RRNAD1Q96FB5 475 aaKnown RBP11□□□□□ -0.65
CLN3-213ENST00000565047 PRRT1Q99946 306 aa11□□□□□ -0.65
CLN3-213ENST00000565047 C6orf62Q9GZU0 229 aaPredicted RBP11□□□□□ -0.65
CLN3-213ENST00000565047 RSL24D1Q9UHA3 163 aaKnown RBP11□□□□□ -0.65
CLN3-213ENST00000565047 C14orf166Q9Y224 244 aaKnown RBP11□□□□□ -0.65
CLN3-213ENST00000565047 IGHV3-49A0A0A0MS15 119 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 OR4C46A6NHA9 309 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 CORTO00230 105 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 YIF1AO95070 293 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 SUPT4H1P63272 117 aaKnown RBP10.99□□□□□ -0.65
CLN3-213ENST00000565047 ZNF600Q6ZNG1 722 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 OR4X1Q8NH49 305 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.99□□□□□ -0.65
CLN3-213ENST00000565047 CACNG5Q9UF02 275 aa10.99□□□□□ -0.65
CLN3-213ENST00000565047 PUS1Q9Y606 427 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLN3-213ENST00000565047 KIR2DL5BA0A0G2JN68 375 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 KIR2DL5BA0A0G2JPC4 375 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 FABP12A6NFH5 140 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 CLN5O75503 358 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 IGKV1-17P01599 117 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 HOXA1P49639 335 aaPredicted RBP10.98□□□□□ -0.65
CLN3-213ENST00000565047 SUB1P53999 127 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLN3-213ENST00000565047 NMSQ5H8A3 153 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 TMEM268Q5VZI3 342 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 Q6ZWC4 215 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 KIR2DL5AQ8N109 375 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 KIR2DL5BQ8NHK3 375 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 MCFD2Q8NI22 146 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 ST8SIA2Q92186 375 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 IL22RA2Q969J5 263 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 TRIM63Q969Q1 353 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 PDCD10Q9BUL8 212 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 PRR13Q9NZ81 148 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 TP53TG1Q9Y2A0 90 aa10.98□□□□□ -0.65
CLN3-213ENST00000565047 IGHV3OR16-13A0A075B7E8 117 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 IGHV3-74A0A0B4J1X5 117 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 EWSR1Q01844 656 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLN3-213ENST00000565047 KLF9Q13886 244 aaPredicted RBP10.97□□□□□ -0.65
CLN3-213ENST00000565047 ZNF124Q15973 351 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 C2orf83Q53S99 150 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 APRG1Q8IVJ8 170 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 RBM38Q9H0Z9 239 aaKnown RBP10.97□□□□□ -0.65
CLN3-213ENST00000565047 MAP6D1Q9H9H5 199 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 V9GYH0 126 aa10.97□□□□□ -0.65
CLN3-213ENST00000565047 UBE2CO00762 179 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 DFFBO76075 338 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 HTR2BP41595 481 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 PRSS54Q6PEW0 395 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 IL17DQ8TAD2 202 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 RNF183Q96D59 192 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 SCP2D1Q9UJQ7 156 aa10.96□□□□□ -0.65
CLN3-213ENST00000565047 NXPH3O95157 252 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 CRYBB3P26998 211 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 OPRK1P41145 380 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 APOC4P55056 127 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 ZNF79Q15937 498 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 TCF24Q7RTU0 167 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 LYZL2Q7Z4W2 148 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 RNASEH2CQ8TDP1 164 aaKnown RBP10.95□□□□□ -0.66
CLN3-213ENST00000565047 GINS3Q9BRX5 216 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 U3KQE9 123 aa10.95□□□□□ -0.66
CLN3-213ENST00000565047 TRAV2A0A0B4J234 112 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 A0A0B4J2A0 478 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 SPRY2O43597 315 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 CD5P06127 495 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 IGLC1P0CG04 106 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 BMI1P35226 326 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 TFPI2P48307 235 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 TNFRSF9Q07011 255 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 DEFB135Q30KP9 77 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 TIGITQ495A1 244 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 CCDC190Q86UF4 302 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 GBGT1Q8N5D6 347 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 FAM24BQ8N5W8 94 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 RNASE11Q8TAA1 199 aaKnown RBP10.94□□□□□ -0.66
CLN3-213ENST00000565047 MS4A6AQ9H2W1 248 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 ENY2Q9NPA8 101 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 HSPB7Q9UBY9 170 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 SHPKQ9UHJ6 478 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 KCNIP3Q9Y2W7 256 aa10.94□□□□□ -0.66
CLN3-213ENST00000565047 BIRC6Q9NR09 4857 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 IGKV3-7A0A075B6H7 116 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 IGHV3-66A0A0C4DH42 116 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 PITX3O75364 302 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 SULT1A3P0DMM9 295 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 SULT1A4P0DMN0 295 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 RPL35AP18077 110 aaKnown RBP10.93□□□□□ -0.66
CLN3-213ENST00000565047 CMC4P56277 68 aaPredicted RBP10.93□□□□□ -0.66
CLN3-213ENST00000565047 SLC24A4Q8NFF2 622 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 SCGB3A2Q96PL1 93 aa10.93□□□□□ -0.66
CLN3-213ENST00000565047 HEYLQ9NQ87 328 aaPredicted RBP10.93□□□□□ -0.66
CLN3-213ENST00000565047 MCUBQ9NWR8 336 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms