RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 IGHV3-74A0A0B4J1X5 117 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 IGHV7-4-1A0A0J9YVY3 117 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 ZNF701M0R085 212 aaPredicted RBP11.7□□□□□ -0.54
VPS39-203ENST00000561797 TSPAN4O14817 238 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 TMEM50AO95807 157 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 SULT1A3P0DMM9 295 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 SULT1A4P0DMN0 295 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 AARDQ4LEZ3 155 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 PVRIGQ6DKI7 326 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 TMED4Q7Z7H5 227 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 IL22RA2Q969J5 263 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 OR10C1Q96KK4 312 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 FAM110AQ9BQ89 295 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 RHPN1-AS1Q9BWJ2 59 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 HIPK2Q9H2X6 1198 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 FNDC4Q9H6D8 234 aaPredicted RBP11.7□□□□□ -0.54
VPS39-203ENST00000561797 MRPL36Q9P0J6 103 aaKnown RBP11.7□□□□□ -0.54
VPS39-203ENST00000561797 STAB2Q8WWQ8 2551 aa11.7□□□□□ -0.54
VPS39-203ENST00000561797 TRAV14DV4A0A0A6YYC5 116 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 CHEK1O14757 476 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 ANXA3P12429 323 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 HTR2BP41595 481 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 BSXQ3C1V8 233 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 SPANXN2Q5MJ10 180 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 TOMM20LQ6UXN7 152 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 LYZL2Q7Z4W2 148 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 RNF2Q99496 336 aa11.69□□□□□ -0.54
VPS39-203ENST00000561797 PUS1Q9Y606 427 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS39-203ENST00000561797 IGKV3-7A0A075B6H7 116 aa11.68□□□□□ -0.54
VPS39-203ENST00000561797 ZNF600Q6ZNG1 722 aa11.68□□□□□ -0.54
VPS39-203ENST00000561797 LGI3Q8N145 548 aa11.68□□□□□ -0.54
VPS39-203ENST00000561797 GINS3Q9BRX5 216 aa11.68□□□□□ -0.54
VPS39-203ENST00000561797 LOC102724200A0A096LPH7 203 aaPredicted RBP11.67□□□□□ -0.54
VPS39-203ENST00000561797 A0A0B4J2A0 478 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 A0A1B0GU03 582 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 CLN5O75503 358 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 LYL1P12980 280 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 TFPI2P48307 235 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 CCR6P51684 374 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 SMCO1Q147U7 214 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 C2orf83Q53S99 150 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 SLC24A4Q8NFF2 622 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 GGTLC1Q9BX51 225 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 SRRQ9GZT4 340 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 EDA2RQ9HAV5 297 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 SHPKQ9UHJ6 478 aa11.67□□□□□ -0.54
VPS39-203ENST00000561797 HUWE1Q7Z6Z7 4374 aaKnown RBP11.67□□□□□ -0.54
VPS39-203ENST00000561797 IGHV3-66A0A0C4DH42 116 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 RPS10-NUDT3A0A1W2PQS6 291 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 OR4C46A6NHA9 309 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 APOHP02749 345 aaPredicted RBP11.66□□□□□ -0.54
VPS39-203ENST00000561797 VAMP1P23763 118 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 INPP1P49441 399 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 SRPXP78539 464 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 TMEM128Q5BJH2 165 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 NMSQ5H8A3 153 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 CASC10Q5T4H9 136 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 ZFAND6Q6FIF0 208 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 GBGT1Q8N5D6 347 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 OR4X1Q8NH49 305 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 ST8SIA2Q92186 375 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 RBKSQ9H477 322 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 ZFAND3Q9H8U3 227 aa11.66□□□□□ -0.54
VPS39-203ENST00000561797 IFNA10P01566 189 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 NPY1RP25929 384 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 TNFRSF9Q07011 255 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 ODF3L2Q3SX64 289 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 TIGITQ495A1 244 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 TCF24Q7RTU0 167 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 OR1S1Q8NH92 325 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 TMEM170AQ8WVE7 144 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 DEDD2Q8WXF8 326 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 SLC25A21Q9BQT8 299 aaPredicted RBP11.65□□□□□ -0.54
VPS39-203ENST00000561797 CACFD1Q9UGQ2 172 aa11.65□□□□□ -0.54
VPS39-203ENST00000561797 TRAV30A0A087WSZ9 112 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 LINC00854A0A1B0GVQ3 168 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 SCGB2A1O75556 95 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 BMI1P35226 326 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 RND2P52198 227 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 BAK1Q16611 211 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 FAM90A2PQ658T7 463 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 PRSS54Q6PEW0 395 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 WFDC3Q8IUB2 231 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 LILRB2Q8N423 598 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 RNASEH2CQ8TDP1 164 aaKnown RBP11.64□□□□□ -0.55
VPS39-203ENST00000561797 DTD1Q8TEA8 209 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 HSPB7Q9UBY9 170 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 NBEAL2Q6ZNJ1 2754 aa11.64□□□□□ -0.55
VPS39-203ENST00000561797 SFT2D2O95562 160 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 SLC25A4P12235 298 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 NPPCP23582 126 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 RPL11P62913 178 aaKnown RBP11.63□□□□□ -0.55
VPS39-203ENST00000561797 PPP1R1AQ13522 171 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 TRIQKQ629K1 86 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 NOXA1Q86UR1 476 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 APRG1Q8IVJ8 170 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 CENPSQ8N2Z9 138 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 VSIRQ9H7M9 311 aa11.63□□□□□ -0.55
VPS39-203ENST00000561797 DUXBA0A1W2PPF3 345 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 DFFBO76075 338 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms