RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ZNF726P1Q15940 193 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 GCSAMLQ5JQS6 135 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 SFT2D1Q8WV19 159 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 NPIPB3Q92617 1050 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 PXMP4Q9Y6I8 212 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 SSX7Q7RTT5 188 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 RPP25LQ8N5L8 163 aaKnown RBP16.78■□□□□ 0.28
CLN3-209ENST00000561689 RCC1LQ96I51 464 aaKnown RBP16.78■□□□□ 0.28
CLN3-209ENST00000561689 NUDT19A8MXV4 375 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 CORTO00230 105 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 MT-CO2P00403 227 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 CRYGCP07315 174 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 OR5T1Q8NG75 326 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 OR10G4Q8NGN3 311 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 OR10G9Q8NGN4 311 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 OR10G7Q8NGN6 311 aa16.78■□□□□ 0.28
CLN3-209ENST00000561689 ATP6V0E1O15342 81 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 OR10J1P30954 320 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 RND2P52198 227 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 CCL20P78556 96 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 ETFRF1Q6IPR1 90 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 STPG3Q8N7X2 389 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 TREM1Q9NP99 234 aa16.77■□□□□ 0.28
CLN3-209ENST00000561689 NPIPB5A8MRT5 1133 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 NUPL2O15504 423 aaKnown RBP16.77■□□□□ 0.27
CLN3-209ENST00000561689 YIF1AO95070 293 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 IGHV4-59P01825 116 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 MBP02144 154 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 B2MP61769 119 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 SPSB3Q6PJ21 355 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 LCN15Q6UWW0 184 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 TTC9CQ8N5M4 171 aa16.77■□□□□ 0.27
CLN3-209ENST00000561689 GATA2P23769 480 aaPredicted RBP16.76■□□□□ 0.27
CLN3-209ENST00000561689 GUCA2BQ16661 112 aa16.76■□□□□ 0.27
CLN3-209ENST00000561689 ECSCRQ19T08 205 aa16.76■□□□□ 0.27
CLN3-209ENST00000561689 SGMS2Q8NHU3 365 aa16.76■□□□□ 0.27
CLN3-209ENST00000561689 SLC45A2Q9UMX9 530 aa16.76■□□□□ 0.27
CLN3-209ENST00000561689 I3L2K1 104 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 ACOT6Q3I5F7 207 aaPredicted RBP16.75■□□□□ 0.27
CLN3-209ENST00000561689 FAM122CQ6P4D5 195 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 TMUB1Q9BVT8 246 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 SLC25A22Q9H936 323 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 SLC39A9Q9NUM3 307 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 PITPNC1Q9UKF7 332 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 TLN2Q9Y4G6 2542 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 NOTCH2Q04721 2471 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 C9JQL5 133 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 HMGB3O15347 200 aaKnown RBP16.75■□□□□ 0.27
CLN3-209ENST00000561689 RPL29P47914 159 aaKnown RBP16.75■□□□□ 0.27
CLN3-209ENST00000561689 FGF8P55075 233 aaPredicted RBP16.75■□□□□ 0.27
CLN3-209ENST00000561689 PRR20EP86478 221 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 PRR20CP86479 221 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 PRR20DP86480 221 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 PRR20BP86481 221 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 PRR20AP86496 221 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 C9orf152Q5JTZ5 239 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 KCNIP2Q9NS61 270 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 TNFRSF19Q9NS68 423 aa16.75■□□□□ 0.27
CLN3-209ENST00000561689 MXRA5Q9NR99 2828 aa16.74■□□□□ 0.27
CLN3-209ENST00000561689 UNQ5815/PRO19632Q6UWF5 114 aa16.74■□□□□ 0.27
CLN3-209ENST00000561689 IL17RELQ6ZVW7 336 aa16.74■□□□□ 0.27
CLN3-209ENST00000561689 OR1L6Q8NGR2 347 aa16.74■□□□□ 0.27
CLN3-209ENST00000561689 FANCD2OSQ96PS1 177 aa16.74■□□□□ 0.27
CLN3-209ENST00000561689 IGKV1D-37A0A075B6S9 117 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 ZFP92A6NM28 416 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 F8W036 122 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 G3V318 75 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 LINC00869P0C866 280 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 IER3P46695 156 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 C10orf91Q5T1B1 145 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 C9orf139Q6ZV77 190 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 FAM74A7A6NL05 159 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 K7EIM0 57 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 DNASE2O00115 360 aaPredicted RBP16.73■□□□□ 0.27
CLN3-209ENST00000561689 ZNF90Q03938 601 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 FAM74A3Q4VXF1 159 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 TMEM116Q8NCL8 245 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 MBD3L1Q8WWY6 194 aa16.73■□□□□ 0.27
CLN3-209ENST00000561689 NKX6-2Q9C056 277 aaPredicted RBP16.73■□□□□ 0.27
CLN3-209ENST00000561689 ACTR3CQ9C0K3 210 aaPredicted RBP16.73■□□□□ 0.27
CLN3-209ENST00000561689 GSX1Q9H4S2 264 aaPredicted RBP16.73■□□□□ 0.27
CLN3-209ENST00000561689 IGLV11-55A0A075B6I3 123 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 MAP1LC3B2A6NCE7 125 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 TSPAN4O14817 238 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 CYB5BO43169 146 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 CD5P06127 495 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 BLCAPP62952 87 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 CYP2G1PQ6ZSU1 146 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 THAP8Q8NA92 274 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 RAB24Q969Q5 203 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 ZNF48Q96MX3 618 aaPredicted RBP16.72■□□□□ 0.27
CLN3-209ENST00000561689 MAP1LC3BQ9GZQ8 125 aa16.72■□□□□ 0.27
CLN3-209ENST00000561689 SOX15O60248 233 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 SPNS3Q6ZMD2 512 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 LINC00527Q9UJ94 153 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 CARHSP1Q9Y2V2 147 aaKnown RBP16.71■□□□□ 0.27
CLN3-209ENST00000561689 S4R3C0 116 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 TRAV1-1A0A0B4J248 108 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 HBE1P02100 147 aa16.71■□□□□ 0.27
CLN3-209ENST00000561689 COMMD1Q8N668 190 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms