RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 H0YIZ8 118 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 IGLV3-19P01714 112 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 TEX38Q6PEX7 206 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 OR2K2Q8NGT1 345 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 TSKUQ8WUA8 353 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 MS4A6AQ9H2W1 248 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 TRIP12Q14669 1992 aaPredicted RBP11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 MRPL14Q6P1L8 145 aaKnown RBP11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 OCC1Q8TAD7 63 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 SIGMAR1Q99720 223 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 MEGF9Q9H1U4 602 aa11.03□□□□□ -0.64
CSPG4P11-201ENST00000560634 TGFBR3LH3BV60 316 aa11.02□□□□□ -0.64
CSPG4P11-201ENST00000560634 PAX2Q02962 417 aa11.02□□□□□ -0.64
CSPG4P11-201ENST00000560634 SLC25A28Q96A46 364 aa11.02□□□□□ -0.64
CSPG4P11-201ENST00000560634 TMEM133Q9H2Q1 129 aa11.02□□□□□ -0.64
CSPG4P11-201ENST00000560634 SLC25A15Q9Y619 301 aa11.02□□□□□ -0.64
CSPG4P11-201ENST00000560634 XIRP1Q702N8 1843 aaKnown RBP11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGLV3-32A0A0A0MS00 114 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 HOXA3O43365 443 aaPredicted RBP11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 RSPO4Q2I0M5 234 aaPredicted RBP11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 FAM168AQ92567 244 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 TNFRSF14Q92956 283 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 CD7P09564 240 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 SRSF7Q16629 238 aaKnown RBP eCLIP11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 HEPN1Q6WQI6 88 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 C11orf68Q9H3H3 251 aaKnown RBP11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 C7orf69Q9H7B7 122 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 HSD52Q0P140 79 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 NPFFR1Q9GZQ6 430 aa11.02□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGKV1-9A0A0C4DH69 117 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 EFNB3Q15768 340 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 TMEM167AQ8TBQ9 72 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 IFI27L1Q96BM0 104 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 ZNF837Q96EG3 531 aaPredicted RBP11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 DMRTA2Q96SC8 542 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 CSRP2Q16527 193 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 COL4A5P29400 1685 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 TRAV1-1A0A0B4J248 108 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 OR9G4Q8NGQ1 327 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 SSBP4Q9BWG4 385 aaPredicted RBP11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 FOCADQ5VW36 1801 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 A8MWV9 139 aa11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 DUTP33316 252 aaKnown RBP11.01□□□□□ -0.65
CSPG4P11-201ENST00000560634 LOC102723996A0A087X1L8 192 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 A0A1W2PRS3 328 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 CCL3L1P16619 93 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 GNG5P63218 68 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 TMEM42Q69YG0 159 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 TBX6O95947 436 aaPredicted RBP11□□□□□ -0.65
CSPG4P11-201ENST00000560634 SLC25A48Q6ZT89 311 aaKnown RBP11□□□□□ -0.65
CSPG4P11-201ENST00000560634 ZNF815PA8K554 130 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 CD5P06127 495 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 UMODP07911 640 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 HIST1H2BLQ99880 126 aa11□□□□□ -0.65
CSPG4P11-201ENST00000560634 TRGV11A0A075B6L2 103 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 OVOL1O14753 267 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGKCP01834 107 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 FOXL1Q12952 345 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 ZNF479Q96JC4 524 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 ANAPC13Q9BS18 74 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGHV3OR16-8A0A075B7F1 116 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 OR9G9P0C7N8 305 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 ERVK11-1P61568 191 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 TMEM86BQ8N661 226 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 TNFSF13O75888 250 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 C8orf46Q8TAG6 207 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 FNDC4Q9H6D8 234 aaPredicted RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 SEPSECSQ9HD40 501 aaKnown RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 POLR2AP24928 1970 aaKnown RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 ZNF831Q5JPB2 1677 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 A0A1B0GW64 132 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 TGFAP01135 160 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 CD55P08174 381 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 MALP21145 153 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 LHX2P50458 406 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 SRSF6Q13247 344 aaKnown RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 MORN3Q6PF18 240 aaPredicted RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 C1QL4Q86Z23 238 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 JMJD8Q96S16 334 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 CHTOPQ9Y3Y2 248 aaKnown RBP10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 CACNA1EQ15878 2313 aa10.99□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGHV3-11P01762 117 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 PYYP10082 97 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 RASL11AQ6T310 242 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 PAQR4Q8N4S7 273 aaPredicted RBP10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 RNASE6Q93091 150 aaKnown RBP10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 PRSS22Q9GZN4 317 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 KIF13BQ9NQT8 1826 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 RHOGP84095 191 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 C9orf106Q8NAJ2 232 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 GGTLC3B5MD39 225 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 J3QRE1 110 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 GFRA3O60609 400 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 TIMP3P35625 211 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 SRSF3P84103 164 aaKnown RBP10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 ATXN8Q156A1 80 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 LDLRAD2Q5SZI1 272 aa10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 CNOT1A5YKK6 2376 aaKnown RBP10.98□□□□□ -0.65
CSPG4P11-201ENST00000560634 CELA3BP08861 270 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 CEACAM1P13688 526 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms