RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 FAM25CB3EWG5 89 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 FAM25GB3EWG6 89 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 TNFAIP8O95379 198 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 CA1P00915 261 aaPredicted RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 IFNA17P01571 189 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 CD3DP04234 171 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 RNASE2P10153 161 aaKnown RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 SNCAP37840 140 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 ETV6P41212 452 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 AKR1C2P52895 323 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 PPP5CP53041 499 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 RPL11P62913 178 aaKnown RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 PAFAH1B2P68402 229 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 RNASE10Q5GAN6 216 aaKnown RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 PVRIGQ6DKI7 326 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 ZNF600Q6ZNG1 722 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 SLC35G3Q8N808 338 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 OR4D10Q8NGI6 311 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 OR52I2Q8NH67 350 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 C11orf45Q8TAV5 145 aa8.5□□□□□ -1.05
USP3-214ENST00000559718 NAA50Q9GZZ1 169 aaKnown RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 FNDC4Q9H6D8 234 aaPredicted RBP8.5□□□□□ -1.05
USP3-214ENST00000559718 C3orf85A0A1B0GTC6 90 aa8.49□□□□□ -1.05
USP3-214ENST00000559718 INS-IGF2F8WCM5 200 aa8.49□□□□□ -1.05
USP3-214ENST00000559718 DNASE2O00115 360 aaPredicted RBP8.49□□□□□ -1.05
USP3-214ENST00000559718 GIG44P09565 113 aaPredicted RBP8.49□□□□□ -1.05
USP3-214ENST00000559718 RORCP51449 518 aa8.49□□□□□ -1.05
USP3-214ENST00000559718 TRIM16LQ309B1 348 aa8.49□□□□□ -1.05
USP3-214ENST00000559718 ZNF486Q96H40 463 aaPredicted RBP8.49□□□□□ -1.05
USP3-214ENST00000559718 C11orf68Q9H3H3 251 aaKnown RBP8.49□□□□□ -1.05
USP3-214ENST00000559718 HOXA1P49639 335 aaPredicted RBP8.48□□□□□ -1.05
USP3-214ENST00000559718 TMEM187Q14656 261 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 RBMS2Q15434 407 aaKnown RBP8.48□□□□□ -1.05
USP3-214ENST00000559718 LGALS9CQ6DKI2 356 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 Q6ZRM9 215 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 OR13C8Q8NGS7 320 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 ABHD1Q96SE0 405 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 EXTL2Q9UBQ6 330 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 MTFP1Q9UDX5 166 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 RABAC1Q9UI14 185 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 DNAH10Q8IVF4 4471 aa8.48□□□□□ -1.05
USP3-214ENST00000559718 TRAV2A0A0B4J234 112 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 KNCNA6PVL3 124 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 K7EQG2 157 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 CLN5O75503 358 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 IGKV1-17P01599 117 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 CD5P06127 495 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 NPPCP23582 126 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 UCP1P25874 307 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 OPRK1P41145 380 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 SUB1P53999 127 aaKnown RBP eCLIP8.47□□□□□ -1.05
USP3-214ENST00000559718 TIGITQ495A1 244 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 SCGB2B2Q4G0G5 96 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 MZT2AQ6P582 158 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 ARRDC1Q8N5I2 433 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 STXBP6Q8NFX7 210 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 OR4X1Q8NH49 305 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 PDCD10Q9BUL8 212 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 MFFQ9GZY8 342 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 MRPL18Q9H0U6 180 aaKnown RBP8.47□□□□□ -1.05
USP3-214ENST00000559718 COPZ2Q9P299 210 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 VPS13DQ5THJ4 4388 aa8.47□□□□□ -1.05
USP3-214ENST00000559718 CORTO00230 105 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 CD74P04233 296 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 IFNA4P05014 189 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 ZNF688P0C7X2 276 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 RBMY1A1P0DJD3 496 aaKnown RBP8.46□□□□□ -1.06
USP3-214ENST00000559718 RBMY1CP0DJD4 496 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 C4BPBP20851 252 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 CRYBB3P26998 211 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 P2RY1P47900 373 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 RBMY1FQ15415 496 aaKnown RBP8.46□□□□□ -1.06
USP3-214ENST00000559718 CTF1Q16619 201 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 BSXQ3C1V8 233 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 FAAP20Q6NZ36 180 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 TRPT1Q86TN4 253 aaKnown RBP8.46□□□□□ -1.06
USP3-214ENST00000559718 STHQ8IWL8 128 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 Q8NAQ8 132 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 TERB2Q8NHR7 220 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 LHFPL5Q8TAF8 219 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 MARCH1Q8TCQ1 289 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 METTL26Q96S19 204 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 TMEM231Q9H6L2 316 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 ENY2Q9NPA8 101 aa8.46□□□□□ -1.06
USP3-214ENST00000559718 A0A1W2PS18 150 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 ATG12O94817 140 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 RAB3DO95716 219 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 OR5AC1P0C628 307 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 ZNF182P17025 639 aaPredicted RBP8.45□□□□□ -1.06
USP3-214ENST00000559718 TBPP20226 339 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 RPL5P46777 297 aaKnown RBP8.45□□□□□ -1.06
USP3-214ENST00000559718 CCDC71LQ8N9Z2 235 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 TMEM229BQ8NBD8 167 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 RNASE11Q8TAA1 199 aaKnown RBP8.45□□□□□ -1.06
USP3-214ENST00000559718 ZFAND1Q8TCF1 268 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 C2CD4CQ8TF44 421 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 DCANP1Q8TF63 244 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 AP3S1Q92572 193 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 TMEM230Q96A57 120 aa8.45□□□□□ -1.06
USP3-214ENST00000559718 RRNAD1Q96FB5 475 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms