RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AKR1C8PQ5T2L2 129 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 MRPL41Q8IXM3 137 aaKnown RBP6.8□□□□□ -1.32
USP3-208ENST00000558285 FAM24BQ8N5W8 94 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 TMED6Q8WW62 240 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 PRRT1Q99946 306 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 HSPB9Q9BQS6 159 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 SLC5A7Q9GZV3 580 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 PARP12Q9H0J9 701 aaKnown RBP6.8□□□□□ -1.32
USP3-208ENST00000558285 TMEM231Q9H6L2 316 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 SHPKQ9UHJ6 478 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 WSB1Q9Y6I7 421 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 NBEAL1Q6ZS30 2694 aa6.8□□□□□ -1.32
USP3-208ENST00000558285 ADARB2-AS1A8MUL3 147 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 RAMP3O60896 148 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 FCGR3BO75015 233 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 DFFBO76075 338 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 CA2P00918 260 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PPYP01298 95 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 IGKV1-16P04430 117 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PGAM2P15259 253 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 TBPP20226 339 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PSMB8P28062 276 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 INSL3P51460 131 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PDLIM3Q53GG5 364 aaPredicted RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 KHDC3LQ587J8 217 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 TCTEX1D4Q5JR98 221 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 C9orf66Q5T8R8 295 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PRSS54Q6PEW0 395 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 Q6ZPA2 131 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 LCNL1Q6ZST4 164 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 C8orf86Q6ZUL3 223 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 OR4A5Q8NH83 315 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 GPX8Q8TED1 209 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 SECTM1Q8WVN6 248 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 DCUN1D4Q92564 292 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 EHFQ9NZC4 300 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 ANK2Q01484 3957 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 KRTAP4-8A0A0G2JLE6 195 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 RBFOX2O43251 390 aaKnown RBP eCLIP6.79□□□□□ -1.329e-6■□□□□ 10.4
USP3-208ENST00000558285 IGLV1-40P01703 118 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 HLA-AP01891 365 aaKnown RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 ZNF25P17030 456 aaPredicted RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 RPS10P46783 165 aaKnown RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 RAB9AP51151 201 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 TPPP2P59282 170 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 RUNX1Q01196 453 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 CFHR3Q02985 330 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 ZNF616Q08AN1 781 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 CLINT1Q14677 625 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 KPRPQ5T749 579 aaPredicted RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 FAAP20Q6NZ36 180 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 USMG5Q96IX5 58 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 PACRGQ96M98 296 aaPredicted RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 KRTAP9-9Q9BYP9 154 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 KRTAP9-4Q9BYQ2 154 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 SLC35B3Q9H1N7 401 aa6.79□□□□□ -1.32
USP3-208ENST00000558285 STRAPQ9Y3F4 350 aaKnown RBP6.79□□□□□ -1.32
USP3-208ENST00000558285 A0A1W2PPQ1 181 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 JTBO76095 146 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 PMP2P02689 132 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 TRGV3P03979 118 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 CNTFRP26992 372 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 SNCAP37840 140 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 ECI1P42126 302 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 FXYD4P59646 89 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 TNXAQ16473 311 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 FBLN7Q53RD9 439 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 AADACL3Q5VUY0 350 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 C5orf24Q7Z6I8 188 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 LINC00482Q8N8I6 264 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 OR1N2Q8NGR9 330 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 TMEM208Q9BTX3 173 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 ELOVL1Q9BW60 279 aa6.78□□□□□ -1.32
USP3-208ENST00000558285 FAM212BQ9NTI7 297 aaPredicted RBP6.78□□□□□ -1.32
USP3-208ENST00000558285 PIGBOS1A0A0B4J2F0 54 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 LINC01548A6NM66 108 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 B4DEV8 164 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 UMAD1C9J7I0 102 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BKO60814 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 BRI3O95415 125 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HPRT1P00492 218 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BJP06899 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BOP23527 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 PPIFP30405 207 aaKnown RBP6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BBP33778 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 LPAR6P43657 344 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BDP58876 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BCP62807 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 PRSS8Q16651 343 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 GUK1Q16774 197 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST2H2BEQ16778 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 BEAN1Q3B7T3 259 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 SCGB2B2Q4G0G5 96 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.77□□□□□ -1.33
USP3-208ENST00000558285 GGNBP1Q5YKI7 109 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 ZNF491Q8N8L2 437 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 OR11H1Q8NG94 326 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 DDB2Q92466 427 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 HIST1H2BHQ93079 126 aa6.77□□□□□ -1.33
USP3-208ENST00000558285 RITA1Q96K30 269 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms