RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ZFP30Q9Y2G7 519 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 POLR3KQ9Y2Y1 108 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 YLPM1P49750 1951 aaKnown RBP10.24□□□□□ -0.77
SHMT2-229ENST00000557348 ZNF462Q96JM2 2506 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 GCN1Q92616 2671 aaKnown RBP10.24□□□□□ -0.77
SHMT2-229ENST00000557348 OVOL3O00110 214 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 TEX38Q6PEX7 206 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 TEX45Q8NA69 505 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 OR11H6Q8NGC7 330 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 RPEQ96AT9 228 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 TRAPPC1Q9Y5R8 145 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 LY96Q9Y6Y9 160 aa10.24□□□□□ -0.77
SHMT2-229ENST00000557348 TRAV3A0A0B4J244 114 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 A0A1W2PPQ1 181 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 A0A1W2PPR1 153 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 C19orf84I3L1E1 186 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 PLA2G2AP14555 144 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 MDKP21741 143 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-229ENST00000557348 PRTN3P24158 256 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 RAB31Q13636 194 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 TOMM20LQ6UXN7 152 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 RSG1Q9BU20 258 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 WDR83OSQ9Y284 106 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 INSIG2Q9Y5U4 225 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 HIVEP3Q5T1R4 2406 aa10.23□□□□□ -0.77
SHMT2-229ENST00000557348 OOSP1A8MZH6 123 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 C22orf46C9J442 243 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 BRS3P32247 399 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 CDKN1AP38936 164 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 ERHP84090 104 aaKnown RBP10.22□□□□□ -0.77
SHMT2-229ENST00000557348 Q0VG73 95 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 C2orf83Q53S99 150 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 SPINK9Q5DT21 86 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 SAPCD1Q5SSQ6 148 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 TMEM37Q8WXS4 190 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 NPCDR1Q9BY65 106 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 ZNRD1Q9P1U0 126 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 NBASA2RRP1 2371 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 IGHV1-3A0A0C4DH29 117 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 SRRM4A7MD48 611 aaKnown RBP10.22□□□□□ -0.77
SHMT2-229ENST00000557348 LY6HO94772 140 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 HTR1DP28221 377 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 REG1BP48304 166 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 SUB1P53999 127 aaKnown RBP eCLIP10.22□□□□□ -0.779e-7■■■□□ 17.8
SHMT2-229ENST00000557348 MMD2Q8IY49 270 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 OR4P4Q8NGL7 312 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 CMTM2Q8TAZ6 248 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 ORAOV1Q8WV07 137 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 NPVFQ9HCQ7 196 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 DPM3Q9P2X0 92 aa10.22□□□□□ -0.77
SHMT2-229ENST00000557348 TEX50A0A1B0GTY4 177 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 PRSS46E5RG02 174 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 J3QKU1 62 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 NDUFS8O00217 210 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 MT-ND6P03923 174 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 PCP4P48539 62 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 CCDC144NLQ6NUI1 221 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 PNKDQ8N490 385 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 RPP25LQ8N5L8 163 aaKnown RBP10.21□□□□□ -0.78
SHMT2-229ENST00000557348 TBX15Q96SF7 602 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 HINT2Q9BX68 163 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 NDUFA4L2Q9NRX3 87 aa10.21□□□□□ -0.78
SHMT2-229ENST00000557348 HELZ2Q9BYK8 2649 aaKnown RBP10.2□□□□□ -0.78
SHMT2-229ENST00000557348 C20orf202A1L168 122 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 LY6LH3BQJ8 138 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 CA2P00918 260 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 COX7A1P24310 79 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 G0S2P27469 103 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 OPRK1P41145 380 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 ELLP55199 621 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-229ENST00000557348 RPS20P60866 119 aaKnown RBP10.2□□□□□ -0.78
SHMT2-229ENST00000557348 TPTE2P1Q5T6R2 138 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 MINOS1Q5TGZ0 78 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 ZNF705AQ6ZN79 300 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-229ENST00000557348 KLHDC1Q8N7A1 406 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 CACNG8Q8WXS5 425 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 RNF2Q99496 336 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 VAMP8Q9BV40 100 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 LPAR2Q9HBW0 351 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 AURKAIP1Q9NWT8 199 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-229ENST00000557348 MINOS1-NBL1R4GNA1 71 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 ARL2-SNX15V9GYD0 113 aa10.2□□□□□ -0.78
SHMT2-229ENST00000557348 ZNF705FA8MVS1 300 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-229ENST00000557348 RRHO14718 337 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 FOXH1O75593 365 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 ACTL6BO94805 426 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 ZNF705DP0CH99 300 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-229ENST00000557348 ZNF705BP0CI00 300 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-229ENST00000557348 RPL29P47914 159 aaKnown RBP10.19□□□□□ -0.78
SHMT2-229ENST00000557348 COMPP49747 757 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-229ENST00000557348 TEPPQ6URK8 271 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 MOB3BQ86TA1 216 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 LINC01551Q86U37 167 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 Q8N7P7 452 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 OR4F5Q8NH21 305 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 IGFBPL1Q8WX77 278 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 OR4F4Q96R69 305 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 CCL19Q99731 98 aa10.19□□□□□ -0.78
SHMT2-229ENST00000557348 SRSF8Q9BRL6 282 aaKnown RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms