RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 DKK4Q9UBT3 224 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 ARF6P62330 175 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 C1orf229Q6ZS94 237 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 PRO3102Q9H379 93 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 TRBV20OR9-2A0A075B6H5 130 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 MMDQ15546 238 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 LINC00305Q7Z4B0 112 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 PRR7Q8TB68 274 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 FBXL15Q9H469 300 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 TMEM242Q9NWH2 141 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 COL5A1P20908 1838 aaPredicted RBP9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 ST6GALNAC3Q8NDV1 305 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 COL4A2P08572 1712 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 M0R143 59 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 UPK2O00526 184 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 IGHV3-23P01764 117 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 APCSP02743 223 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 RBPJQ06330 500 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 C17orf58Q2M2W7 97 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 MBNL2Q5VZF2 373 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 PRNTQ86SH4 94 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 IL36BQ9NZH7 164 aa9.94□□□□□ -0.82
CCDC88C-211ENST00000556726 LAMA5O15230 3695 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 Q6ZN92 141 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 ERASQ7Z444 233 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 PGLYRP4Q96LB8 373 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 A6NNC1 897 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 PMS2P5A8MQ11 134 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 C17orf100A8MU93 164 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 M0R2Z0 102 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 GCGP01275 180 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 RPL27AP46776 148 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 LOXL3P58215 753 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 ZCCHC14Q8WYQ9 949 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 ST6GALNAC6Q969X2 333 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 GAFA1Q96PS6 74 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 GNB4Q9HAV0 340 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 ELOVL5Q9NYP7 299 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 FAM215AQ9Y5M1 114 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 IGHV3OR16-13A0A075B7E8 117 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 IGHV3-74A0A0B4J1X5 117 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 WNT2P09544 360 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 VDAC2P45880 294 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 TFPI2P48307 235 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 SSBP2P81877 361 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 TMEM183BQ1AE95 376 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 TCF24Q7RTU0 167 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 TPSG1Q9NRR2 321 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 TMEM106BQ9NUM4 274 aa9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 RPUSD1Q9UJJ7 312 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-211ENST00000556726 SEM1Q6ZVN7 128 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 OR4C13Q8NGP0 309 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 NOL4LQ96MY1 436 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 ZNF430Q9H8G1 570 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 TBL2Q9Y4P3 447 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 SETD2Q9BYW2 2564 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 PTPN13Q12923 2485 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 DYSFO75923 2080 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 A0A1W2PN81 502 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 DLL1O00548 723 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 COL8A1P27658 744 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 BRS3P32247 399 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 PMCHL1Q16048 86 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 TMEM144Q7Z5S9 345 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 NEU1Q99519 415 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 SLC25A33Q9BSK2 321 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 DPRXA6NFQ7 191 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 M0QZ24 198 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 EREGO14944 169 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 CD3EP07766 207 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 HNRNPA3P51991 378 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 CTAG1AP78358 180 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 TMEM200BQ69YZ2 307 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 VSTM2AQ8TAG5 236 aa9.92□□□□□ -0.82
CCDC88C-211ENST00000556726 TNRC18O15417 2968 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 TRAV8-1A0A0A6YYK1 113 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 LCN2P80188 198 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 KLF17Q5JT82 389 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 ACTL10Q5JWF8 245 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 WASHC3Q9Y3C0 194 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 CNTFRP26992 372 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 CDKN1AP38936 164 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 LCN12Q6JVE5 192 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 GBGT1Q8N5D6 347 aa9.91□□□□□ -0.82
CCDC88C-211ENST00000556726 GGCTO75223 188 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 PRCDQ00LT1 54 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 MORN5Q5VZ52 161 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 PNKDQ8N490 385 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 PMCHL2Q9BQD1 86 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 A0A0G2JNJ9 132 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 P01737 135 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 MCRIP2Q9BUT9 160 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 Q9UFV3 132 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 DSCAMO60469 2012 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 TLN2Q9Y4G6 2542 aa9.9□□□□□ -0.82
CCDC88C-211ENST00000556726 AREGP15514 252 aa9.9□□□□□ -0.83
CCDC88C-211ENST00000556726 CD69Q07108 199 aa9.9□□□□□ -0.83
CCDC88C-211ENST00000556726 TDRG1Q3Y452 100 aa9.9□□□□□ -0.83
CCDC88C-211ENST00000556726 TMEM177Q53S58 311 aa9.9□□□□□ -0.83
CCDC88C-211ENST00000556726 GOLT1AQ6ZVE7 132 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms