RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 STAG3L3P0CL85 134 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 TMEM11P17152 192 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 NPBWR1P48145 328 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 RHOBP62745 196 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 FXYD3Q14802 87 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 FBLN7Q53RD9 439 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 ZNF562Q6V9R5 426 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 LRRC75A-AS1Q8N1F1 130 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 PIP4P2Q8N4L2 257 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 WFDC11Q8NEX6 87 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 C1RLQ9NZP8 487 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 MYO9AB2RTY4 2548 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 DNASE2O00115 360 aaPredicted RBP11.69□□□□□ -0.54
VPS33B-205ENST00000556096 MSMBP08118 114 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 DEFA4P12838 97 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 CYP2G1PQ6ZSU1 146 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 OR1L6Q8NGR2 347 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 NPIPB3Q92617 1050 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 MISP3Q96FF7 219 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 ACY3Q96HD9 319 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 TMPRSS5Q9H3S3 457 aa11.69□□□□□ -0.54
VPS33B-205ENST00000556096 IGHV1-69DA0A0B4J2H0 117 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 CXorf1O96002 111 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 IGHV1-69P01742 117 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 FBP1P09467 338 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 CTRB1P17538 263 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 CTRB2Q6GPI1 263 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 CYB561D1Q8N8Q1 229 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 TMEM116Q8NCL8 245 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 SUN5Q8TC36 379 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 Q96MF0 132 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 FOXC2Q99958 501 aa11.68□□□□□ -0.54
VPS33B-205ENST00000556096 ZNF469Q96JG9 3925 aaPredicted RBP11.68□□□□□ -0.54
VPS33B-205ENST00000556096 TCRBV4S1A1TA0A5B7 111 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 NCBP2LA6PVI3 153 aaKnown RBP11.67□□□□□ -0.54
VPS33B-205ENST00000556096 B4DSR2 109 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 SELENOTP62341 195 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 MEF2BQ02080 365 aaPredicted RBP11.67□□□□□ -0.54
VPS33B-205ENST00000556096 NANPQ8TBE9 248 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 ABHD5Q8WTS1 349 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 C22orf15Q8WYQ4 148 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 SLC25A33Q9BSK2 321 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 WNT10AQ9GZT5 417 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 MED13LQ71F56 2210 aa11.67□□□□□ -0.54
VPS33B-205ENST00000556096 IGKV1D-37A0A075B6S9 117 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 PLXNB1O43157 2135 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 MT-CO2P00403 227 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 APELAP0DMC3 54 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 RND2P52198 227 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 CX3CL1P78423 397 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 FAM120AOSQ5T036 256 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 Q8N9W7 124 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 MAPK1IP1LQ8NDC0 245 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 SEPSECSQ9HD40 501 aaKnown RBP11.66□□□□□ -0.54
VPS33B-205ENST00000556096 MRPL36Q9P0J6 103 aaKnown RBP11.66□□□□□ -0.54
VPS33B-205ENST00000556096 DMRT1Q9Y5R6 373 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 OTOGQ6ZRI0 2925 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 FAM74A7A6NL05 159 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 OR5G3P0C626 314 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 GATA3P23771 443 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 CD81P60033 236 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 FAM74A3Q4VXF1 159 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 FAM90A2PQ658T7 463 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 SPNS3Q6ZMD2 512 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 GATAD1Q8WUU5 269 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 ARPC1AQ92747 370 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 RNF2Q99496 336 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 TRGV9Q99603 122 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 FUT9Q9Y231 359 aa11.66□□□□□ -0.54
VPS33B-205ENST00000556096 CR1P17927 2039 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 A0A096LNT2 108 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 TRAV20A0A0B4J274 112 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 NPIPB5A8MRT5 1133 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 TMEM250H0YL14 139 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 I3L2K1 104 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 ARL14EPLP0DKL9 152 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 GATA2P23769 480 aaPredicted RBP11.65□□□□□ -0.54
VPS33B-205ENST00000556096 FAM78BQ5VT40 261 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 C19orf35Q6ZS72 473 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 IQCF2Q8IXL9 164 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 TXNDC17Q9BRA2 123 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 MEGF9Q9H1U4 602 aa11.65□□□□□ -0.54
VPS33B-205ENST00000556096 WNK2Q9Y3S1 2297 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 PSMB11A5LHX3 300 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 H3BQ15 152 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 PAGE4O60829 102 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 IGHV3-48P01763 117 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 HLA-DRB1P01911 266 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 CEBPGP53567 150 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 AWAT1Q58HT5 328 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 SPATA31B1PQ5VZV4 182 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 TTC9CQ8N5M4 171 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-205ENST00000556096 MRPL32Q9BYC8 188 aaKnown RBP11.64□□□□□ -0.55
VPS33B-205ENST00000556096 C7orf69Q9H7B7 122 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 PUS1Q9Y606 427 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS33B-205ENST00000556096 CREBBPQ92793 2442 aa11.64□□□□□ -0.55
VPS33B-205ENST00000556096 RNF223E7ERA6 249 aa11.63□□□□□ -0.55
VPS33B-205ENST00000556096 M0R036 132 aa11.63□□□□□ -0.55
VPS33B-205ENST00000556096 GCHFRP30047 84 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms