RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ATP6V0BQ99437 205 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 TXN2Q99757 166 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 NEURL2Q9BR09 285 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 RBKSQ9H477 322 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 PALMDQ9NP74 551 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 DAZ1Q9NQZ3 744 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 MRPL27Q9P0M9 148 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 U3KQK5 164 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 A0A1B0GU03 582 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 NDUFB6O95139 128 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 NHLRC4P0CG21 123 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 ANXA3P12429 323 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 FCGR2BP31994 310 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 OPRK1P41145 380 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 SUB1P53999 127 aaKnown RBP eCLIP8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 ELLP55199 621 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 RBMS2Q15434 407 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 CNPY1Q3B7I2 92 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 TOMM20LQ6UXN7 152 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 DUSP18Q8NEJ0 188 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 DEDD2Q8WXF8 326 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 MARC2Q969Z3 335 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 HSPB7Q9UBY9 170 aa8.68□□□□□ -1.02
CCDC88C-208ENST00000554165 IGHV3-66A0A0C4DH42 116 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 PITX3O75364 302 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 IGKV1-17P01599 117 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 APOHP02749 345 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 HOXB5P09067 269 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 ANXA7P20073 488 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 HTR2BP41595 481 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 NPBWR1P48145 328 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 SRPXP78539 464 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 HAGHQ16775 308 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 TIGITQ495A1 244 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 C2orf83Q53S99 150 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 LILRB2Q8N423 598 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 LRTM2Q8N967 370 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 SLC24A4Q8NFF2 622 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 OR1S1Q8NH92 325 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 DTD1Q8TEA8 209 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 RNF2Q99496 336 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 MAGT1Q9H0U3 335 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 TUBA4BQ9H853 241 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 GAR1Q9NY12 217 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 SMPXQ9UHP9 88 aa8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 PUS1Q9Y606 427 aaKnown RBP eCLIP8.67□□□□□ -1.02
CCDC88C-208ENST00000554165 IGHV7-4-1A0A0J9YVY3 117 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 C9orf170A2RU37 121 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RBMY1BA6NDE4 496 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RBMY1EA6NEQ0 496 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 NAP1L6A6NFF2 107 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 C15orf62A8K5M9 175 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 MPTX1A8MV57 137 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 A8MZ25 164 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 OR11H12B2RN74 326 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 K7EMT4 169 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 CHEK1O14757 476 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 CLN5O75503 358 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 ADAP1O75689 374 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 IFNA10P01566 189 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RBMY1DP0C7P1 496 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 IAPPP10997 89 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 NPY1RP25929 384 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RND2P52198 227 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RELQ04864 619 aaPredicted RBP8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 GGNBP1Q5YKI7 109 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 PRSS54Q6PEW0 395 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RBPMS2Q6ZRY4 209 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 OR52B4Q8NGK2 314 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 OR4X1Q8NH49 305 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 OR10C1Q96KK4 312 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RCHY1Q96PM5 261 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 CITED4Q96RK1 184 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RHPN1-AS1Q9BWJ2 59 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 SRD5A3Q9H8P0 318 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 ZFAND3Q9H8U3 227 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 RETNQ9HD89 108 aa8.66□□□□□ -1.02
CCDC88C-208ENST00000554165 IGKV3-7A0A075B6H7 116 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 CORTO00230 105 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 OR4E1P0C645 316 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 UBE2MP61081 183 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 DHRS2Q13268 280 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 LINC00322Q6ZN03 302 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 ZNF600Q6ZNG1 722 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 TMEM116Q8NCL8 245 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 TM2D3Q9BRN9 247 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 HIPK2Q9H2X6 1198 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 UBQLN2Q9UHD9 624 aa8.65□□□□□ -1.02
CCDC88C-208ENST00000554165 TRAV14DV4A0A0A6YYC5 116 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 TRAV25A0A0B4J276 109 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 DUXBA0A1W2PPF3 345 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 LYRM1O43325 122 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 IGLC1P0CG04 106 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 TFPI2P48307 235 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 LYG2Q86SG7 212 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 GBGT1Q8N5D6 347 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 RNASEH2CQ8TDP1 164 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 ST8SIA2Q92186 375 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 NPIPB3Q92617 1050 aa8.64□□□□□ -1.03
CCDC88C-208ENST00000554165 ACY3Q96HD9 319 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms