RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 IGHV4-30-2A0A087WSY4 118 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 IGKV1-6A0A0C4DH72 117 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 ODAMA1E959 279 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 GAGE12BA1L429 117 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A10PA6NDY2 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A18PA6NE21 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A16PA6NEW6 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A20PA6NIJ5 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A8PA6NJQ4 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A7PA6NKC0 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A22PA8MWA6 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A12PA8MX19 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A5PA8MXJ8 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A23PA8MXZ1 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A26D6RGX4 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 SMAD7O15105 426 aaKnown RBP6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A15PP0C7V4 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A13PP0C7W8 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A14PP0C7W9 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM90A24PP0C7X0 464 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 DEFA4P12838 97 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 BMI1P35226 326 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 MPV17P39210 176 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 RIPPLY3P57055 190 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 COX19Q49B96 90 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 PLCXD3Q63HM9 321 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 AMMECR1LQ6DCA0 310 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 BATF2Q8N1L9 274 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 OR10P1Q8NGE3 313 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 SLC25A40Q8TBP6 338 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 TSKUQ8WUA8 353 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 CLEC7AQ9BXN2 247 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 OR2W1Q9Y3N9 320 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FN1P02751 2386 aaKnown RBP6.27□□□□□ -1.41
LIMA1-216ENST00000552909 NAV3Q8IVL0 2385 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 OR2T8A6NH00 312 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 RNF223E7ERA6 249 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 CORTO00230 105 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FRMD6-AS1P0C7T7 363 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 IGLL1P15814 213 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 NTF3P20783 257 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 EFNA4P52798 201 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 TMEM249Q2WGJ8 235 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 SMIM21Q3B7S5 101 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 MPV17L2Q567V2 206 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 LCN12Q6JVE5 192 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM71F2Q6NXP2 309 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 Q71RC1 249 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-216ENST00000552909 OR8I2Q8N0Y5 310 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 FAM19A2Q8N3H0 131 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 KLF14Q8TD94 323 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-216ENST00000552909 JMJD1CQ15652 2540 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 HIVEP2P31629 2446 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 MXRA5Q9NR99 2828 aa6.27□□□□□ -1.41
LIMA1-216ENST00000552909 IGLV3-9A0A075B6K5 115 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 SCO2A0A1W2PP80 73 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 A0A1W2PPV4 95 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 ANKRD30BLA7E2S9 258 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 VSTM5A8MXK1 200 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 LYNX1G3V0Z9 82 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 J3QW42 95 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 LYNX1P0DP58 116 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 CA6P23280 308 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 SRIP30626 198 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 RELBQ01201 579 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 PSG7Q13046 419 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 KIAA1644Q3SXP7 199 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 DEFB125Q8N687 156 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 OR1L1Q8NH94 360 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 RAB1CQ92928 201 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 DYNLRB1Q9NP97 96 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 LIN7CQ9NUP9 197 aaKnown RBP6.26□□□□□ -1.41
LIMA1-216ENST00000552909 WASHC3Q9Y3C0 194 aa6.26□□□□□ -1.41
LIMA1-216ENST00000552909 H0YJW9 148 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 J3QR06 171 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 K7EN84 100 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 M0R1X1 148 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 HSPB6O14558 160 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 RAMP3O60896 148 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 ZNF16P17020 682 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-216ENST00000552909 PPOXP50336 477 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 GPM6AP51674 278 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 CEACAM21Q3KPI0 293 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 Q56UQ5 140 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 C16orf54Q6UWD8 224 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 TMEM136Q6ZRR5 245 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 ZNF439Q8NDP4 499 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 MALRD1Q5VYJ5 2156 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 TRAV38-1A0A0B4J264 116 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 IGHV3-13P01766 116 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 HLA-DQA1P01909 254 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 LINC00869P0C866 280 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 SELENOVP59797 346 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 CX3CL1P78423 397 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 VWC2Q2TAL6 325 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 ZNF718Q3SXZ3 478 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 BVES-AS1Q5T3Y7 98 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 PET117Q6UWS5 81 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 C12orf54Q6X4T0 127 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 SCCPDHQ8NBX0 429 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 261.5 ms