RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PHLDA3Q9Y5J5 127 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 NAIPQ13075 1403 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 GRIN2AQ12879 1464 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 FOCADQ5VW36 1801 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 CDK5RAP2Q96SN8 1893 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 TICRRQ7Z2Z1 1910 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 PLXND1Q9Y4D7 1925 aa4.34□□□□□ -1.71
VPS29-210ENST00000552130 OTOFQ9HC10 1997 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 MYH7P12883 1935 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 CECR2Q9BXF3 1484 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 ARHGAP23Q9P227 1491 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 MBD5Q9P267 1494 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 TRAPPC8Q9Y2L5 1435 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 TRAV13-1A0A0B4J241 112 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 ZFP92A6NM28 416 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 BBIP1A8MTZ0 92 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 H3BMG7 143 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 IGHV4-34P06331 123 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 CXCL1P09341 107 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 TLX1NBP0CAT3 122 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 CD28P10747 220 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 CRYBB3P26998 211 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 AKR1C2P52895 323 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 EIF5AP63241 154 aaKnown RBP4.33□□□□□ -1.72
VPS29-210ENST00000552130 HES1Q14469 280 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 C15orf56Q8N910 161 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 DEDD2Q8WXF8 326 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 TMEM191AQ9H0A3 160 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 SLC39A9Q9NUM3 307 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 C21orf62Q9NYP8 219 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 MARCOQ9UEW3 520 aaPredicted RBP4.33□□□□□ -1.72
VPS29-210ENST00000552130 SVILO95425 2214 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 PCNX3Q9H6A9 2034 aa4.33□□□□□ -1.72
VPS29-210ENST00000552130 TCOF1Q13428 1488 aaKnown RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 ABCC10Q5T3U5 1492 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 CRYGSP22914 178 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 FOXA3P55318 350 aaPredicted RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 YPEL3P61236 119 aaPredicted RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 UBE2BP63146 152 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 LINC01554Q52M75 96 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 MEIG1Q5JSS6 88 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 FAM104BQ5XKR9 115 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 GTF2H5Q6ZYL4 71 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 SPATA12Q7Z6I5 190 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 PCP2Q8IVA1 136 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 AMN1Q8IY45 258 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 OR5D14Q8NGL3 314 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 OR8D4Q8NGM9 314 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 SDF2Q99470 211 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 ADAT1Q9BUB4 502 aaKnown RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 BANF2Q9H503 90 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 ZNF586Q9NXT0 402 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 ZNFX1Q9P2E3 1918 aaKnown RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 PLXNB3Q9ULL4 1909 aa4.32□□□□□ -1.72
VPS29-210ENST00000552130 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.32□□□□□ -1.72
VPS29-210ENST00000552130 HCFC1P51610 2035 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 DSPPQ9NZW4 1301 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 FAM236AA0A1B0GUQ0 79 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 FAM236BA0A1B0GV22 79 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 HLA-DQA1P01909 254 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 GIG44P09565 113 aaPredicted RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 OR5AC1P0C628 307 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 CGB3P0DN86 165 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 CGB7P0DN87 165 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 PTHLHP12272 177 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 HIST1H1BP16401 226 aaKnown RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 HBBP68871 147 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 RHOGP84095 191 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 MEF2BQ02080 365 aaPredicted RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 C11orf42Q8N5U0 333 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 CD177Q8N6Q3 437 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 CIRBP-AS1Q8TBR5 109 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 SLC25A46Q96AG3 418 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 MRPL57Q9BQC6 102 aaKnown RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 MRPL32Q9BYC8 188 aaKnown RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 FAM60AQ9NP50 221 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 LHX9Q9NQ69 397 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 CCDC167Q9P0B6 97 aa4.31□□□□□ -1.72
VPS29-210ENST00000552130 GPATCH8Q9UKJ3 1502 aaKnown RBP4.31□□□□□ -1.72
VPS29-210ENST00000552130 NLRC5Q86WI3 1866 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 LEUTXA8MZ59 168 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 UBFD1O14562 309 aaKnown RBP4.3□□□□□ -1.72
VPS29-210ENST00000552130 NPPCP23582 126 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 TSPEAR-AS2P59090 65 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 GNB2P62879 340 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 PLGLB1Q02325 96 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 MRPL51Q4U2R6 128 aaKnown RBP4.3□□□□□ -1.72
VPS29-210ENST00000552130 HSD17B12Q53GQ0 312 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 COL5A1-AS1Q5SY13 56 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 FAAP20Q6NZ36 180 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 NTM-AS1Q6ZSK4 140 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 PHF5AQ7RTV0 110 aaKnown RBP4.3□□□□□ -1.72
VPS29-210ENST00000552130 ZFAND2AQ8N6M9 145 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 Q8N976 141 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 WFDC5Q8TCV5 224 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 VGLL1Q99990 258 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 SNHG12Q9BXW3 62 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 RERGLQ9H628 205 aa4.3□□□□□ -1.72
VPS29-210ENST00000552130 TNS2Q63HR2 1409 aa4.29□□□□□ -1.72
VPS29-210ENST00000552130 PCM1Q15154 2024 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms