RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 SDHAF2Q9NX18 166 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 BABAM2Q9NXR7 383 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 C21orf62Q9NYP8 219 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 OR1A1Q9P1Q5 309 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 GHRLQ9UBU3 117 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 WARS2Q9UGM6 360 aaKnown RBP1.46□□□□□ -2.18
PTCH1-223ENST00000551623 SAMHD1Q9Y3Z3 626 aaKnown RBP1.46□□□□□ -2.18
PTCH1-223ENST00000551623 PEX16Q9Y5Y5 336 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 S4R3C0 116 aa1.46□□□□□ -2.18
PTCH1-223ENST00000551623 TRAV9-2A0A087WT02 112 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 A0A096LPF7 62 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 TRBV6-7A0A0A0MS04 114 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 HELTA6NFD8 242 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 F5H768 121 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 H7C423 109 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF701M0R085 212 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 DNASE2O00115 360 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 CYB5BO43169 146 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ST8SIA3O43173 380 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 RBFOX2O43251 390 aaKnown RBP eCLIP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 DENRO43583 198 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PRKYO43930 277 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 NXPH4O95158 308 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 CRYZL1O95825 349 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF688P0C7X2 276 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 CD37P11049 281 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 DEFA4P12838 97 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ANXA8P13928 327 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 RPA2P15927 270 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 SRMP19623 302 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 SERPINA2P20848 420 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF93P35789 620 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 CEACAM6P40199 344 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PSMD7P51665 324 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PSME3P61289 254 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 SNRPGP62308 76 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 SNRPD3P62318 126 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 RPL8P62917 257 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 HLA-DRB3P79483 266 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF85Q03923 595 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 WT1-ASQ06250 92 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GAGE5Q13069 117 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GAGE6Q13070 117 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 MRPL28Q13084 256 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 UNC119Q13432 240 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 EIF4EBP1Q13541 118 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 FFAR4Q5NUL3 377 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GGNBP1Q5YKI7 109 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 C12orf73Q69YU5 71 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 KDM4DQ6B0I6 523 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR2T5Q6IEZ7 315 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 AMTNQ6UX39 209 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PP632Q6XCG6 107 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF493Q6ZR52 646 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 FAM220AQ7Z4H9 259 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 TPRA1Q86W33 373 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 SYS1Q8N2H4 156 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 C10orf126Q8N4M7 172 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR10G2Q8NGC3 310 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR4C16Q8NGL9 310 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR13F1Q8NGS4 319 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR10J6PQ8NGY7 276 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 OR2T29Q8NH02 315 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GPR148Q8TDV2 347 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GIPC3Q8TF64 312 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 IL1F10Q8WWZ1 152 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GNPNAT1Q96EK6 184 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 VSIG2Q96IQ7 327 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 CYYR1Q96J86 154 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 IGF2BP2-AS1Q96M15 143 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 LINC00479Q96M42 142 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GPER1Q99527 375 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PAIP2Q9BPZ3 127 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 C20orf24Q9BUV8 137 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 TEX12Q9BXU0 123 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PRRG3Q9BZD7 231 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 REEP1Q9H902 201 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 C12orf4Q9NQ89 552 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 IMPAD1Q9NX62 359 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 BET1LQ9NYM9 111 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 RDH8Q9NYR8 311 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 NKIRAS1Q9NYS0 192 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 GOLT1BQ9Y3E0 138 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 F11RQ9Y624 299 aaKnown RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 V9GYY5 206 aaPredicted RBP1.45□□□□□ -2.18
PTCH1-223ENST00000551623 PKHD1L1Q86WI1 4243 aa1.45□□□□□ -2.18
PTCH1-223ENST00000551623 IGKV3-7A0A075B6H7 116 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 TRAV26-1A0A087WT03 109 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 TRAV5A0A0B4J249 113 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 NDUFAF8A1L188 74 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 FOXI3A8MTJ6 420 aaPredicted RBP1.44□□□□□ -2.18
PTCH1-223ENST00000551623 I3L2K1 104 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 SOCS3O14543 225 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 CRXO43186 299 aaPredicted RBP1.44□□□□□ -2.18
PTCH1-223ENST00000551623 ZNF207O43670 478 aaKnown RBP1.44□□□□□ -2.18
PTCH1-223ENST00000551623 EDF1O60869 148 aaKnown RBP1.44□□□□□ -2.18
PTCH1-223ENST00000551623 SLC22A5O76082 557 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 CD2P06729 351 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 HTR1AP08908 422 aa1.44□□□□□ -2.18
PTCH1-223ENST00000551623 DEFB130BP0DP73 79 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms