RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 DCUN1D5Q9BTE7 237 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 RHPN1-AS1Q9BWJ2 59 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 GABARAPL3Q9BY60 117 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 TMPRSS5Q9H3S3 457 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 RNF167Q9H6Y7 350 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 AMBNQ9NP70 447 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 KLK9Q9UKQ9 250 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 ELF5Q9UKW6 265 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 DIMT1Q9UNQ2 313 aaKnown RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 TRBV6-6A0A0A6YYG2 114 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 IGHV7-4-1A0A0J9YVY3 117 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 TCRBV3S1A0A5B6 114 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 KNCNA6PVL3 124 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 K7EMT4 169 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 NDUFA4O00483 81 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 BET1O15155 118 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 DHFRP00374 187 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 ALPLP05186 524 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 EMP1P54849 157 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 MRPL28Q13084 256 aaKnown RBP4.55□□□□□ -1.68
LIMA1-204ENST00000549064 IZUMO4Q1ZYL8 232 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 RPL22L1Q6P5R6 122 aaKnown RBP4.55□□□□□ -1.68
LIMA1-204ENST00000549064 MORN3Q6PF18 240 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-204ENST00000549064 NFE4Q86UQ8 179 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 ZNRF2Q8NHG8 242 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 GABARAPL1Q9H0R8 117 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 OR51E2Q9H255 320 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 TMEM14BQ9NUH8 114 aa4.55□□□□□ -1.68
LIMA1-204ENST00000549064 NUPL2O15504 423 aaKnown RBP4.54□□□□□ -1.68
LIMA1-204ENST00000549064 SOCS1O15524 211 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 KBTBD11O94819 623 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 LALBAP00709 142 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 LIMS3P0CW19 117 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 LIMS4P0CW20 117 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 CRHBPP24387 322 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 PTBP1P26599 531 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIMA1-204ENST00000549064 RPS11P62280 158 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIMA1-204ENST00000549064 HAMPP81172 84 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 UNC119Q13432 240 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 TPBGQ13641 420 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 FLOT2Q14254 428 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 Q499Y3 187 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 TCF24Q7RTU0 167 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 PUSL1Q8N0Z8 303 aaKnown RBP4.54□□□□□ -1.68
LIMA1-204ENST00000549064 ZFP41Q8N8Y5 198 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 OR52I1Q8NGK6 324 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 TMEM167AQ8TBQ9 72 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 NUDCD2Q8WVJ2 157 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 ADTRPQ96IZ2 230 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 FAM210BQ96KR6 192 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 C2orf48Q96LS8 159 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 TMEM59Q9BXS4 323 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 KRTAP9-3Q9BYQ3 159 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 KRTAP1-5Q9BYS1 174 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 S100A14Q9HCY8 104 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 PLEKHJ1Q9NW61 149 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 CKLFQ9UBR5 152 aa4.54□□□□□ -1.68
LIMA1-204ENST00000549064 RBM7Q9Y580 266 aaKnown RBP4.54□□□□□ -1.68
LIMA1-204ENST00000549064 IGHV3-66A0A0C4DH42 116 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 TRDCB7Z8K6 153 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 J3QRK9 145 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 DNASE2O00115 360 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 SPART-AS1P0CW21 52 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 HOXB6P17509 224 aaKnown RBP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 SRMP19623 302 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 RPL30P62888 115 aaKnown RBP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 SRSF9Q13242 221 aaKnown RBP eCLIP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 ARFRP1Q13795 201 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 MEF2DQ14814 521 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 HSP90B2PQ58FF3 399 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 TMEM41BQ5BJD5 291 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 MEDAGQ5VYS4 303 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 STPG4Q8N801 248 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 UBAC2Q8NBM4 344 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 TRUB1Q8WWH5 349 aaKnown RBP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 SMIM19Q96E16 107 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 TM2D1Q9BX74 207 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 MS4A6AQ9H2W1 248 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 C12orf4Q9NQ89 552 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 SMPD3Q9NY59 655 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-204ENST00000549064 MGAT4AQ9UM21 535 aa4.53□□□□□ -1.68
LIMA1-204ENST00000549064 PNMA8CA0A1B0GUJ8 204 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 IGLC7A0M8Q6 106 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 FABP7O15540 132 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 DCTN3O75935 186 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 YIF1AO95070 293 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 MAS1LP35410 378 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 ETV1P50549 477 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 TMEM50BP56557 158 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 KRTAP10-1P60331 282 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 RPL8P62917 257 aaKnown RBP4.52□□□□□ -1.69
LIMA1-204ENST00000549064 PAFAH1B2P68402 229 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 ATP6AP1Q15904 470 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 CCDC58Q4VC31 144 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 ACTL10Q5JWF8 245 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 LCE3BQ5TA77 95 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 FAM222AQ5U5X8 452 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 UBE2UQ5VVX9 321 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 Q6ZVQ6 151 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 CDH26Q8IXH8 852 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms